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- IdentMS
  - Pepxml < ObjectMS::Ident
    SearchHit < ObjectMS::Ident::Pepxml
    Sequest < StructMS::Ident::Pepxml::SearchHit
- SequestMS
  - Params < ObjectMS::Sequest
  - Pepxml < ObjectMS::Sequest
    Modifications < ObjectMS::Sequest::Pepxml
  - Sqt < ObjectMS::Sequest
    Header < HashMS::Sequest::Sqt
    Locus < ObjectMS::Sequest::Sqt
    Match < ObjectMS::Sequest::Sqt
    Percolator < MatchMS::Sequest::Sqt::Match
    Spectrum < ObjectMS::Sequest::Sqt
  - SqtGroup < ObjectMS::Sequest
  - Srf < SearchMS::Sequest
    Dta < ObjectMS::Sequest::Srf
    DtaGen < ObjectMS::Sequest::Srf
    Header < ObjectMS::Sequest::Srf
    NoSequestParamsError < ArgumentErrorMS::Sequest::Srf
    Out < ObjectMS::Sequest::Srf
    Peptide < ObjectMS::Sequest::Srf::Out
    Protein < ProteinMS::Sequest::Srf::Out
    PepxmlMS::Sequest::Srf
    SearchMS::Sequest::Srf
    SqtMS::Sequest::Srf