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#all_ids Nimbus::TrainingSet
application Nimbus
application= Nimbus
average Nimbus::LossFunctions
#build_node Nimbus::ClassificationTree
#build_node Nimbus::RegressionTree
#build_node Nimbus::Tree
#check_configuration Nimbus::Configuration
class_sizes Nimbus::LossFunctions
class_sizes_in_list Nimbus::LossFunctions
#classes Nimbus::ClassificationTree
#classes Nimbus::Configuration
#classification? Nimbus::Forest
clear_line! Nimbus
#config Nimbus::Application
#config_file Nimbus::Configuration
#display_error_message Nimbus::Application
#do_importances Nimbus::Configuration
#do_testing Nimbus::Configuration
#do_training Nimbus::Configuration
error_message Nimbus
#estimate_importances Nimbus::RegressionTree
#estimate_importances Nimbus::ClassificationTree
#estimate_importances Nimbus::Tree
#fenotype Nimbus::Individual
#forest_file Nimbus::Configuration
#forest_size Nimbus::Configuration
#generalization_error Nimbus::Tree
#generalization_error_from_oob Nimbus::Tree
#generalization_error_from_oob Nimbus::ClassificationTree
#generalization_error_from_oob Nimbus::RegressionTree
gini_index Nimbus::LossFunctions
#grow Nimbus::Forest
#id Nimbus::Individual
#id_to_fenotype Nimbus::Tree
#ids_fenotypes Nimbus::TrainingSet
#importances Nimbus::Tree
#individuals Nimbus::Tree
#individuals Nimbus::TrainingSet
#initialize Nimbus::ClassificationTree
#initialize Nimbus::Forest
#initialize Nimbus::Application
#initialize Nimbus::Tree
#initialize Nimbus::Configuration
#initialize Nimbus::TrainingSet
#initialize Nimbus::Individual
#load Nimbus::Configuration
#load_forest Nimbus::Configuration
#load_training_data Nimbus::Configuration
#log_configuration Nimbus::Configuration
#loss_function_continuous Nimbus::Configuration
#loss_function_discrete Nimbus::Configuration
majority_class Nimbus::LossFunctions
majority_class_in_list Nimbus::LossFunctions
mean_squared_error Nimbus::LossFunctions
message Nimbus
#nimbus_exception_handling Nimbus::Application
#node_min_size Nimbus::Tree
#options Nimbus::Forest
#output_forest_file Nimbus::Configuration
#output_snp_importances_file Nimbus::Configuration
#output_testing_file Nimbus::Configuration
#output_training_file Nimbus::Configuration
#output_tree_errors_file Nimbus::Configuration
#prediction Nimbus::Individual
#predictions Nimbus::Forest
#predictions Nimbus::Tree
pseudo_huber_error Nimbus::LossFunctions
pseudo_huber_loss Nimbus::LossFunctions
quadratic_loss Nimbus::LossFunctions
#read_testing_data Nimbus::Configuration
#regression? Nimbus::Forest
#run Nimbus::Application
#seed Nimbus::ClassificationTree
#seed Nimbus::RegressionTree
#seed Nimbus::Tree
#silent Nimbus::Configuration
#size Nimbus::Forest
#snp_importances Nimbus::Forest
#snp_list Nimbus::Individual
#snp_sample_size Nimbus::Tree
#snp_total_count Nimbus::Tree
squared_difference Nimbus::LossFunctions
stop Nimbus
#structure Nimbus::Tree
#testing_file Nimbus::Configuration
#to_yaml Nimbus::Forest
#training_file Nimbus::Configuration
#training_set Nimbus::Configuration
#traverse Nimbus::Forest
traverse Nimbus::Tree
#traverse_classification_forest Nimbus::Forest
#traverse_regression_forest Nimbus::Forest
#tree Nimbus::Configuration
#tree_SNP_sample_size Nimbus::Configuration
#tree_SNP_total_count Nimbus::Configuration
#tree_errors Nimbus::Forest
#tree_node_min_size Nimbus::Configuration
#trees Nimbus::Forest
#used_snps Nimbus::Tree
write Nimbus