Method List
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R_eval VectorModel
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R_train VectorModel
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#abs Signature
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#activity_cluster Matrix
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#add VectorModel
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adjust_hash! FDR
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adjust_native FDR
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#average_label Matrix
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#average_samples Matrix
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average_samples Expression
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barcode Expression
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#barcode Matrix
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#channel Matrix
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#clean_empty Signature
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combine RandomWalk
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#comparison Matrix
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#cross_validation VectorModel
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#data Matrix
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#data_file Matrix
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#differential Matrix
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differential Expression
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dijkstra AssociationItem
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dijkstra Paths
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#directory VectorModel
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draw BarPlot
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draw_hits RandomWalk
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#draw_hits OrderedList
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draw_hits OrderedList
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draw_hits_on_canvas BarPlot
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draw_sections_on_canvas BarPlot
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#enrichment Entity::Enriched
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#enrichment TSV
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#enrichment_for TSV
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#eval VectorModel
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#eval_list VectorModel
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#eval_model VectorModel
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#extract_features VectorModel
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extract_path Paths
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#features VectorModel
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#find_samples Matrix
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#format Matrix
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geo_matrix_for Matrix
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get_canvas BarPlot
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get_color BarPlot
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gradient_color BarPlot
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heatmap Heatmap
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heatmap2 Heatmap
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heatmap3 Heatmap
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hits OrderedList
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#hits OrderedList
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hypergeometric Hypergeometric
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#identifiers Matrix
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#initialize VectorModel
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#initialize Matrix
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#initialize SVMModel
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#key_field Matrix
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#label_differences Matrix
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#labels VectorModel
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#labels Matrix
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load_matrix Expression
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#log Signature
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#log2 Matrix
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#matrix KnowledgeBase
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matrix_dir Matrix
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#matrix_file Matrix
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#matrix_registry KnowledgeBase
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#model_file VectorModel
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open Signature
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#organism Matrix
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#path_to Entity::Adjacent
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permutations RankProduct
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permutations RandomWalk
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permutations_full RankProduct
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permutations_up_down RandomWalk
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persisted_permutations RandomWalk
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#pvalue OrderedList
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pvalue RandomWalk
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#pvalue_fdr_adjust! Signature
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#pvalue_score Signature
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#pvalue_sorted Signature
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#pvalue_sorted_weights Signature
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#pvalue_weights OrderedList
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#random_forest_importance Matrix
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#random_paths_to Entity::Adjacent
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random_weighted_dijkstra Paths
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#rank_enrichment TSV
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rank_enrichment TSV
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#rank_product TSV
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#ranks Signature
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#ranks_for TSV
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#register_matrix KnowledgeBase
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#remove_missing Matrix
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#sample_differences Matrix
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#samples Matrix
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#score OrderedList
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score RankProduct
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score_up_down RandomWalk
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#score_weights OrderedList
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scoring_method RandomWalk
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#select Signature
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set_scoring RandomWalk
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setup Signature
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setup OrderedList
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#signature_set Matrix
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#significant_pvalues Signature
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#sorted Signature
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step_up_native FDR
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#subsets Matrix
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#to_gene Matrix
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top_down Expression
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top_up Expression
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#total_weights OrderedList
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#train VectorModel
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#train_model VectorModel
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#transform Signature
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tsv_field Signature
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#value_type Matrix
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#values_over Signature
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#values_under Signature
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weighted_dijkstra Paths
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#weights OrderedList