Method List
-
DB_load ID
-
GDS GEO::Process
-
GDS GEO::Process::R
-
GPL GEO::Process
-
GPL GEO::Process::R
-
GPL GEO::SOFT
-
GSE GEO::Process::R
-
GSE GEO::Process
-
GSE GEO::SOFT
-
GSM GEO::SOFT
-
OBA Annotations::UMLS
-
add_pvalues Score
-
add_pvalues MARQ::RankQuery
-
adjust_hash! FDR
-
adjust_native FDR
-
analysis Annotations::Genes::Genecodis::Local
-
analysis Annotations::Genes::Genecodis::WS
-
analyze Annotations::Genes::SENT
-
annotations Annotations
-
broken? MARQ::Dataset
-
#clean FDRTest
-
clean MARQ::Name
-
codes MARQ::Platform
-
codes MARQ::Dataset
-
codes_for MARQ::Dataset
-
combine Score
-
compare Annotations
-
consecutive? GEO::SOFT
-
#copy FDRTest
-
#count_smaller Array
-
cross_platform MARQ::Platform
-
cross_platform MARQ::Name
-
dataset_annotations Annotations
-
dataset_organism CustomDS
-
dataset_organism GEO
-
dataset_path CustomDS
-
dataset_path GEO
-
dataset_platform GEO::Remote
-
dataset_platform GEO
-
dataset_platform CustomDS
-
dataset_scores MARQ::RankQuery
-
dataset_type GEO
-
datasets MARQ::Platform
-
datasets CustomDS
-
dna_sequence? GEO::SOFT
-
draw_hits Score
-
driver Annotations::Genes::Genecodis::WS
-
driver Annotations::Genes::SENT
-
enrichment_hypergeometric Annotations
-
enrichment_rank Annotations
-
exists? MARQ::Platform
-
exists? MARQ::Dataset
-
exp2gds Annotations
-
experiments MARQ::Dataset
-
fix_GSE_ids GEO::Process
-
get_genes Annotations::Genes
-
get_genes_nth Annotations::Genes
-
get_genes_old Annotations::Genes
-
get_soft GEO::SOFT
-
guessIds GEO::SOFT
-
has_cross_platform? MARQ::Dataset
-
has_cross_platform? MARQ::Platform
-
#hash_code String
-
id_position ID
-
info MARQ::Dataset
-
info CustomDS
-
is_GEO? MARQ::Platform
-
is_GEO? MARQ::Dataset
-
is_cross_platform? MARQ::Platform
-
is_cross_platform? MARQ::Name
-
is_cross_platform? MARQ::Dataset
-
is_ratio? MARQ::Name
-
load_positions MADB
-
logratios MARQ::Dataset
-
null_scores Score
-
num_codes MADB
-
num_values MADB
-
numerical? GEO::SOFT
-
orders MARQ::Dataset
-
organism CustomDS
-
organism MARQ::Dataset
-
organism MARQ::Platform
-
organism_platforms CustomDS
-
organism_platforms GEO::Remote
-
organism_platforms MARQ::Platform
-
organism_scores MARQ::RankQuery
-
organisms CustomDS
-
path MARQ::Platform
-
path MARQ::Dataset
-
permutations RankProduct
-
permutations Score
-
permutations_full RankProduct
-
platform MARQ::Dataset
-
platform_datasets GEO::Remote
-
platform_datasets CustomDS
-
platform_organism CustomDS
-
platform_organism GEO::Remote
-
platform_path CustomDS
-
platform_path GEO
-
platform_scores MARQ::RankQuery
-
platforms GEO
-
process MARQ::Platform
-
process MARQ::Dataset
-
process_dataset GEO
-
process_dataset CustomDS
-
process_platform CustomDS
-
process_platform GEO
-
process_results Annotations::Genes::SENT
-
pvalues MARQ::Dataset
-
r CustomDS
-
r GEO::Process::R
-
rankproduct RankProduct
-
ranks RankProduct
-
read_file MARQ::Dataset
-
read_values MARQ::Dataset
-
read_values_t MARQ::Dataset
-
rearange GEO::Process
-
rootdir MARQ
-
save_dataset MADB
-
save_platform MADB
-
score Score
-
score RankProduct
-
scores Score
-
scores_up_down Score
-
series_dataset? GEO::Remote
-
#setup FDRTest
-
step_up_native FDR
-
t MARQ::Dataset
-
terms Annotations::Genes::SENT
-
#test_adjust FDRTest
-
#test_step_up FDRTest
-
translate GEO::Process
-
translate_DB ID