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#add ROBundle::File
#add_aggregate ROBundle::File
#add_aggregate ROBundle::Manifest
#add_annotation ROBundle::Manifest
#add_annotation ROBundle::File
#add_author ROBundle::Provenance
#add_context ROBundle::Manifest
#add_history ROBundle::File
#add_history ROBundle::Manifest
#add_target ROBundle::Annotation
#aggregate? ROBundle::File
#aggregates ROBundle::Manifest
#annotatable? ROBundle::File
#annotates? ROBundle::Annotation
#annotation? ROBundle::File
#annotations ROBundle::Manifest
#authored_by ROBundle::Provenance
#authored_on ROBundle::Provenance
#authored_on= ROBundle::Provenance
clean_json ROBundle::Util
#cleanup_annotation_data ROBundle::RODir
#commit ROBundle::File
#commit_required? ROBundle::File
#content ROBundle::Annotation
#content= ROBundle::Annotation
#context ROBundle::Manifest
create ROBundle::File
#created_by ROBundle::Provenance
#created_by= ROBundle::Provenance
#created_on ROBundle::Provenance
#created_on= ROBundle::Provenance
#edited? ROBundle::ManifestEntry
#edited? ROBundle::Manifest
#edited? ROBundle::Aggregate
#file_entry ROBundle::Aggregate
#filename ROBundle::Proxy
#find_entry ROBundle::File
#folder ROBundle::Proxy
#history ROBundle::Manifest
#id ROBundle::Manifest
#id= ROBundle::Manifest
#init ROBundle::Manifest
#init_metadata ROBundle::File
#initialize ROBundle::Manifest
#initialize ROBundle::ManifestEntry
#initialize ROBundle::Proxy
#initialize ROBundle::Agent
#initialize ROBundle::Annotation
#initialize ROBundle::File
#initialize ROBundle::RODir
#initialize ROBundle::RODir::AnnotationsDir
#initialize ROBundle::Aggregate
#initialized? ROBundle::Manifest
is_absolute_uri? ROBundle::Util
#manifest ROBundle::File
#mediatype ROBundle::Aggregate
#name ROBundle::Agent
#orcid ROBundle::Agent
parse_time ROBundle::Util
#proxy ROBundle::Aggregate
#remove ROBundle::File
#remove_aggregate ROBundle::Manifest
#remove_aggregate ROBundle::File
#remove_annotation ROBundle::Manifest
#remove_author ROBundle::Provenance
#remove_target ROBundle::Annotation
#retrieved_by ROBundle::Provenance
#retrieved_by= ROBundle::Provenance
#retrieved_from ROBundle::Provenance
#retrieved_from= ROBundle::Provenance
#retrieved_on ROBundle::Provenance
#retrieved_on= ROBundle::Provenance
#stored ROBundle::Aggregate
#stored ROBundle::ManifestEntry
strip_leading_slash ROBundle::Util
#target ROBundle::Annotation
#to_json ROBundle::Aggregate
#to_json ROBundle::Manifest
#to_json ROBundle::Proxy
#to_json ROBundle::Agent
#to_json ROBundle::Annotation
#uri ROBundle::Aggregate
#uri ROBundle::Proxy
#uri ROBundle::Agent
#uri ROBundle::Annotation
#write ROBundle::Manifest
#write_annotation_data ROBundle::RODir