Method List
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#ace_file_name IndexedAceFile
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#add_bs Read
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#add_data Read
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#add_fasta Contig
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#add_fasta Read
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#add_qual Contig
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#add_qual_clipping Read
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#add_read Contig
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#align_clip_end Read
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#align_clip_start Read
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#bs Read
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#bs_num Contig
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#close IndexedAceFile
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#close AceParser
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#create_contig_indexes IndexedAceFile
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#create_index_file IndexedAceFile
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#each_contig IndexedAceFile
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#fasta Contig
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#fasta Read
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#get_read Contig
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#get_read_names Contig
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#initialize Read
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#initialize AceParser
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#initialize IndexedAceFile
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#initialize Contig
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#item_num Read
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#length Contig
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#name Contig
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#name Read
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#next_contig IndexedAceFile
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#next_contig AceParser
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open IndexedAceFile
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#orientation Contig
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#orientation Read
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#padded_bases_num Read
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#parse_contig AceParser
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#qual Contig
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#qual_clip_end Read
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#qual_clip_start Read
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#read_contig AceParser
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#read_contig IndexedAceFile
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#reads Contig
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#reads_names Contig
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#reads_num Contig
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#start_in_consensus Read
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#tag_num Read
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#write_ace AceParser