Method List
-
#<< Sharder
-
#<< PackedIndex
-
#SOPT_str Workflow
-
#SOPT_str Task
-
#[] FWTAdapter
-
#[] Sharder
-
#[] PKIAdapter
-
#[] TSVAdapter
-
#[] FixWidthTable
-
#[] TSV
-
#[] Entity::FormatIndex
-
#[]= Sharder
-
#[]= PKIAdapter
-
#[]= TSVAdapter
-
#[]= Entity::FormatIndex
-
#[]= FWTAdapter
-
#[]= TSV::Transformer
-
#_ary_property_cache Entity::Object
-
#_dump Step
-
_load Step
-
#_prov_tasks Workflow
-
_select_match AssociationItem
-
#abort WorkQueue::Socket
-
#abort TSV::Dumper
-
#abort Step
-
#abort WorkQueue
-
#abort WorkQueue::Worker
-
#abort_dependencies Step
-
#aborted? Step
-
#add FWTAdapter
-
#add Filtered::Filter
-
#add TSV::Dumper
-
#add PKIAdapter
-
#add FixWidthTable
-
#add_field TSV
-
#add_filter Filtered
-
#add_identifiers Entity
-
#add_point FixWidthTable
-
#add_range FixWidthTable
-
#add_range_point PKIAdapter
-
#add_range_point FixWidthTable
-
#add_range_point FWTAdapter
-
#add_unsaved Filtered::Filter
-
#add_worker WorkQueue
-
adjacency AssociationItem
-
#alias? Task
-
#alias? Step
-
#aliases Top Level Namespace
-
#all_dependencies Step
-
all_fields TSV
-
#all_fields TSV
-
#all_fields TSV::Parser
-
#all_fields TSV::Dumper
-
#all_fields TSV::Transformer
-
#all_properties Entity::Object
-
annonymous_workflow Workflow
-
#annotate_next_task Workflow
-
#annotate_next_task_single Workflow
-
annotation_repo_persist Persist
-
#archive_deps Step
-
#archived_info Step
-
#archived_inputs Step
-
array_method Entity::Property
-
#assign_inputs Task
-
#attach TSV
-
attach TSV
-
autoinstall Workflow
-
#available_resources Workflow::Orchestrator
-
#base_entity Entity::Object
-
#bundle_files Step
-
#callback WorkQueue
-
candidates Workflow::Orchestrator
-
#canfail? Step
-
cast_value TSV
-
#change_id TSV
-
change_id TSV
-
change_key TSV
-
#change_key TSV
-
#check_resources Workflow::Orchestrator
-
#child Step
-
#chunked_values_at FixWidthTable
-
#clean Step
-
#clean WorkQueue::Socket
-
clean Step
-
#clean WorkQueue
-
#clean Filtered::Filter
-
#clean_name Step
-
#cleaned WorkQueue::Socket
-
#close ScoutTKRZW
-
#close Sharder
-
#close PackedIndex
-
#close TSVAdapter
-
#close WorkQueue
-
#close ScoutCabinet
-
#close TSV::Dumper
-
#close FixWidthTable
-
#close_read WorkQueue::Socket
-
#close_write WorkQueue::Socket
-
#closed Sharder
-
#closed TSVAdapter
-
#closed? ScoutCabinet
-
#closed? Sharder
-
#closed? TSVAdapter
-
#closed_read? WorkQueue::Socket
-
#closed_write? WorkQueue::Socket
-
#closest FixWidthTable
-
#cmd Step
-
#cmd SSHProcessFailed
-
#cmd_alias Top Level Namespace
-
#collapse_stream TSV
-
collapse_stream TSV
-
#collect TSVAdapter
-
#collect Sharder
-
#collect TSV
-
#column TSV
-
command SSHLine
-
#commands Top Level Namespace
-
#compute Step
-
concat_streams TSV
-
#config Step
-
#consume_all_streams Step
-
csv TSV
-
#data Filtered::Filter
-
#database Sharder
-
database Association
-
#databases Sharder
-
#db_type Sharder
-
default_directory Task
-
default_server SSHLine
-
#delete TSVAdapter
-
#dep Workflow
-
#dep_tree Workflow
-
#dependencies Task
-
#dependencies Step
-
#desc Workflow
-
#description Workflow
-
#digest_str TSV::Dumper
-
#digest_str TSV::Parser
-
#digest_str Step
-
#digest_str TSV
-
#digest_str Path
-
#directory Workflow
-
#directory Task
-
directory Workflow
-
#dirty? Step
-
doc_parse_chunks Workflow
-
doc_parse_first_line Workflow
-
doc_parse_up_to Workflow
-
#documentation Workflow
-
#documentation_markdown Workflow
-
#done? Step
-
#done? OffsiteStep
-
dump TSVAdapter::FloatSerializer
-
dump TSVAdapter::StringArraySerializer
-
dump TSVAdapter::TSVMarshalSerializer
-
dump TSVAdapter::TSVSerializer
-
dump TSVAdapter::StrictIntegerArraySerializer
-
dump TSVAdapter::StringSerializer
-
dump TSVAdapter::BinarySerializer
-
dump TSVAdapter::IntegerSerializer
-
dump TSVAdapter::IntegerArraySerializer
-
#dump FixWidthTable
-
#dump WorkQueue::Socket
-
dump TSVAdapter::StringDoubleArraySerializer
-
dump TSVAdapter::CleanSerializer
-
dump TSVAdapter::FloatArraySerializer
-
dump TSVAdapter::StrictFloatArraySerializer
-
#dumper TSV::Transformer
-
#dumper_stream TSV
-
#each TSV
-
#each Sharder
-
#each FWTAdapter
-
#each TSV::Transformer
-
#each PKIAdapter
-
#each_annotation_hash_key TSVAdapter
-
#entity_classes Entity::Object
-
entity_property_cache Entity
-
#erase_job_dependencies Workflow::Orchestrator
-
#error? Step
-
#exception Step
-
#exception WorkQueue::Socket
-
#exec Step
-
#exec OffsiteStep
-
#exec_context Step
-
#exec_on Task
-
#exit_status CmdStop
-
#export Workflow
-
extended PKIAdapter
-
extended Filtered
-
extended TKAdapter
-
extended FWTAdapter
-
extended TSVAdapter
-
extended Workflow
-
extended Entity
-
extended ShardAdapter
-
#extension Workflow
-
extract_specs Association
-
#fieldnum Filtered::Filter
-
#fields TSV::Parser
-
#fields TSV::Dumper
-
#fields TSV::Transformer
-
#fields= TSV::Transformer
-
#fields= TSV::Dumper
-
#file FixWidthTable
-
#file Step
-
#file PackedIndex
-
#filename FixWidthTable
-
#filename TSV::Dumper
-
#files Step
-
#files_dir Step
-
#filter TSV
-
#filter Association::Index
-
#filtered_collect Filtered
-
#filtered_delete Filtered
-
#filtered_each Filtered
-
#filtered_filename Filtered
-
#filtered_keys Filtered
-
#filtered_set Filtered
-
#filtered_values Filtered
-
#filters Filtered::FilterArray
-
#find Entity::FormatIndex
-
#find_in_dependencies Workflow
-
#fingerprint TSV::Parser
-
#fingerprint TSV::Dumper
-
#fingerprint Step
-
#fingerprint TSV
-
#first_line TSV::Parser
-
#fork Step
-
fork_each_on_semaphore ScoutSemaphore
-
#format FixWidthTable
-
#format= Entity
-
format_input Task
-
formats Entity
-
#full_task_name Step
-
get FixWidthTable
-
get_SOPT Workflow
-
#get_SOPT Task
-
#get_SOPT Workflow
-
#get_point FixWidthTable
-
#get_position PackedIndex
-
#get_prefix TSVAdapter
-
#get_prefix Sharder
-
#get_range FixWidthTable
-
#grace Step
-
header TSV::Dumper
-
headers Association
-
#helper Workflow
-
#helpers Workflow
-
#host SSHProcessFailed
-
#id Step
-
identifier_files TSV
-
#identifier_files Entity::Identified
-
identifier_files Entity
-
#identifier_index Entity::Identified
-
identify_entity_format Association
-
#identify_field TSV::Parser
-
identify_field TSV
-
#identify_field TSV
-
#identify_field TSV::Transformer
-
#identity_type Entity::Identified
-
#ids Filtered::FilterArray
-
#ids Filtered::Filter
-
#idx_overlap FixWidthTable
-
#idx_pos FixWidthTable
-
#idx_pos_end FixWidthTable
-
#idx_value FixWidthTable
-
#ignore_ouput WorkQueue
-
#ignore_ouput WorkQueue::Worker
-
importtsv ScoutCabinet
-
#importtsv ScoutCabinet
-
incidence AssociationItem
-
incidence TSV
-
#include? Entity::FormatIndex
-
#include? Sharder
-
#include? TSVAdapter
-
#include? ShardAdapter
-
#include? PKIAdapter
-
#include? FWTAdapter
-
#include? TSV::Transformer
-
included Entity::Identified
-
index Association
-
index TSV
-
#index TSV
-
#index Path
-
#info Step
-
#info OffsiteStep
-
#info_file Step
-
#init TSV::Dumper
-
#init_info Step
-
#initialize TSV::Transformer
-
#initialize CmdStop
-
#initialize Step
-
#initialize WorkQueue::Socket
-
#initialize FixWidthTable
-
#initialize Filtered::Filter
-
#initialize Entity::FormatIndex
-
#initialize WorkQueue::Worker
-
#initialize Workflow::Orchestrator
-
#initialize SSHLine::Mock
-
#initialize WorkerException
-
#initialize SSHLine
-
#initialize Sharder
-
#initialize WorkQueue
-
#initialize DoneProcessing
-
#initialize TSV::Parser
-
#initialize SSHProcessFailed
-
#initialize TSV::Dumper
-
#initialize PackedIndex
-
#initialized TSV::Dumper
-
#input Workflow
-
#input_dependencies Step
-
#inputs Task
-
#inputs Step
-
#inputs_directory OffsiteStep
-
#inspect TSV::Dumper
-
#inspect TSV
-
#inspect TSV::Parser
-
install_workflow Workflow
-
installed_workflows Workflow
-
#item_size PackedIndex
-
#job Task
-
#job Workflow
-
job_path? Step
-
job_resources Workflow::Orchestrator
-
job_rules Workflow::Orchestrator
-
job_workload Workflow::Orchestrator
-
#join WorkQueue::Worker
-
#join Step
-
join WorkQueue::Worker
-
#join WorkQueue
-
#key Filtered::Filter
-
#key_field TSV::Parser
-
#key_field TSV::Dumper
-
#key_field TSV::Transformer
-
#key_field= TSV::Transformer
-
#key_field= TSV::Dumper
-
#keys ScoutTKRZW
-
#keys ShardAdapter
-
#keys PKIAdapter
-
#keys Sharder
-
#keys FWTAdapter
-
#keys_annotation_hash_key TSVAdapter
-
#last_pos FixWidthTable
-
#libdir Workflow
-
#list Filtered::Filter
-
list_tsv_values Annotation
-
load Step
-
load TSVAdapter::StrictIntegerArraySerializer
-
load TSVAdapter::CleanSerializer
-
#load Step
-
load TSVAdapter::IntegerArraySerializer
-
load TSVAdapter::IntegerSerializer
-
load TSVAdapter::TSVMarshalSerializer
-
load TSVAdapter::StringDoubleArraySerializer
-
load TSVAdapter::FloatArraySerializer
-
load TSVAdapter::StrictFloatArraySerializer
-
load TSVAdapter::TSVSerializer
-
load TSVAdapter::StringArraySerializer
-
load TSVAdapter::BinarySerializer
-
load TSVAdapter::FloatSerializer
-
load TSVAdapter::StringSerializer
-
#load WorkQueue::Socket
-
#load_annotation_hash FWTAdapter
-
#load_annotation_hash ShardAdapter
-
#load_annotation_hash TSVAdapter
-
#load_annotation_hash PKIAdapter
-
load_info Annotation
-
#load_info Step
-
load_info Step
-
load_input_from_file Task
-
#load_inputs Task
-
load_stream ScoutCabinet
-
load_tsv Annotation
-
load_tsv_values Annotation
-
#load_value TSVAdapter
-
locate SSHLine
-
#lock TSVAdapter
-
#lock_and_close TSVAdapter
-
lock_dir TSVAdapter
-
#log Step
-
main Workflow
-
#marshal_load Step
-
#mask FixWidthTable
-
#mask PackedIndex
-
#mask_length PackedIndex
-
#match Filtered::Filter
-
#match Association::Index
-
match_keys TSV
-
#melt_columns TSV
-
#merge TSV
-
#merge! Sharder
-
#merge! TSVAdapter
-
#merge_info Step
-
#message DoneProcessing
-
#messages Step
-
#metadata_file ShardAdapter
-
#metadata_file FWTAdapter
-
#metadata_file PKIAdapter
-
#method_missing Filtered::FilterArray
-
mkdir SSHLine
-
multi_method Entity::Property
-
#mutex Sharder
-
#name Step
-
#name Workflow
-
#namespace TSV::Transformer
-
#namespace TSV::Dumper
-
#new_worker WorkQueue
-
#nil_string PackedIndex
-
#non_default_inputs Step
-
normalize_specs Association
-
obj_tsv_values Annotation
-
#offset PackedIndex
-
#offsite_job_ssh OffsiteStep
-
#offsite_path OffsiteStep
-
open ScoutTKRZW
-
open SSHLine
-
open Association
-
open ScoutCabinet
-
open TSV
-
open_database Persist
-
open_fwt Persist
-
#open_options ScoutTKRZW
-
open_pki Persist
-
open_sharder Persist
-
open_tokyocabinet Persist
-
#options TSV::Parser
-
#options TSV::Dumper
-
#options TSV
-
#options TSV::Transformer
-
#orchestrate_slurm OffsiteStep
-
#orig_get TSVAdapter
-
#orig_include? Entity::FormatIndex
-
#orig_set TSVAdapter
-
#original_digest_str Path
-
original_setup TSV
-
#overlaps FixWidthTable
-
#overriden Step
-
#overriden? Step
-
#overriden_deps Step
-
#overriden_task Step
-
#overriden_workflow Step
-
#page TSV
-
parse TSV
-
parse_field_specification Association
-
parse_header TSV
-
#parse_key_field Association::Index
-
parse_line TSV
-
parse_stream TSV
-
parse_workflow_doc Workflow
-
#parser TSV::Transformer
-
paste_streams TSV
-
#path Step
-
#persist Entity::Property
-
persist Entity::Property
-
#persist_options Sharder
-
persist_tsv Persist
-
#persisted? Entity::Property
-
#persisted_methods Entity::Property
-
#persistence Filtered::Filter
-
#persistence_class ScoutTKRZW
-
#persistence_class TSVAdapter
-
#persistence_class ScoutCabinet
-
#persistence_path ScoutTKRZW
-
#persistence_path Sharder
-
#persistence_path ScoutCabinet
-
#persistence_path PackedIndex
-
#persistence_path TSVAdapter
-
#persistence_path FixWidthTable
-
#persistence_path= PKIAdapter
-
#persistence_path= FWTAdapter
-
#pid WorkQueue::Worker
-
#pid DoneProcessing
-
#pid WorkerException
-
#pop WorkQueue::Socket
-
#pop_filter Filtered
-
#pos_function PKIAdapter
-
#pos_function FWTAdapter
-
#pos_index TSV
-
pos_index TSV
-
#preamble TSV::Parser
-
#prefix ShardAdapter
-
#prefix TSVAdapter
-
#prefix Sharder
-
prepare_entity Entity
-
#present? Step
-
#prev_dir Top Level Namespace
-
#print_error Top Level Namespace
-
#process WorkQueue::Worker
-
#process TSV
-
process Workflow::Orchestrator
-
#process Workflow::Orchestrator
-
#process WorkQueue
-
process_formats Association
-
#process_inputs Task
-
process_mask PackedIndex
-
process_stream TSV
-
#produce Step
-
produce_dependencies Workflow
-
#progress_bar Step
-
#properties Entity::Property
-
#property Entity::Property
-
prov_indent Step
-
prov_report Step
-
prov_report_msg Step
-
prov_status_msg Step
-
#prov_string Workflow
-
#prov_tree Workflow
-
#provided_inputs Step
-
purge_duplicates Workflow::Orchestrator
-
#push WorkQueue::Socket
-
#queue_id WorkQueue::Worker
-
#queue_id WorkQueue
-
#range Sharder
-
#range FixWidthTable
-
#range TSVAdapter
-
#range_index TSV
-
range_index TSV
-
reach? SSHLine
-
#read ScoutTKRZW
-
#read TSVAdapter
-
#read ScoutCabinet
-
#read FixWidthTable
-
#read PackedIndex
-
#read Sharder
-
#read? TSVAdapter
-
#read? Sharder
-
#read_and_close TSVAdapter
-
#read_and_close Sharder
-
#read_lock TSVAdapter
-
#read_sem WorkQueue::Socket
-
#rec_dependencies Step
-
#record_size FixWidthTable
-
#recoverable_error? Step
-
#recursive_clean Step
-
#recursive_deps Workflow
-
#recursive_inputs Step
-
#recursive_inputs Task
-
#release_resources Workflow::Orchestrator
-
relocate Step
-
#remove_one_worker WorkQueue
-
#remove_worker WorkQueue
-
#reorder TSV
-
#report_status Step
-
require_workflow Workflow
-
require_workflow_file Workflow
-
#reset Filtered::Filter
-
#reset_filters TSV
-
#reset_info Step
-
resolve_tsv_array Annotation
-
#resources_requested Workflow::Orchestrator
-
#resources_used Workflow::Orchestrator
-
#result Step
-
#returns Workflow
-
#reverse Association::Index
-
rsync SSHLine
-
ruby SSHLine
-
#ruby SSHLine::Mock
-
#ruby SSHLine
-
#run WorkQueue::Worker
-
#run Step
-
#run OffsiteStep
-
run SSHLine
-
#run SSHLine::Mock
-
#run SSHLine
-
#run_dependencies Step
-
run_local SSHLine
-
#run_with_rules Workflow::Orchestrator
-
#running? Step
-
#save Filtered::Filter
-
#save_annotation_hash FWTAdapter
-
#save_annotation_hash PKIAdapter
-
#save_annotation_hash ShardAdapter
-
#save_annotation_hash TSVAdapter
-
save_file_input Task
-
#save_info Step
-
save_input Task
-
#save_inputs Step
-
#save_inputs Task
-
#save_value TSVAdapter
-
#saved Filtered::Filter
-
scout SSHLine
-
#scout SSHLine
-
#scout_usage Top Level Namespace
-
select TSV
-
#select TSV
-
select AssociationItem
-
#send_cmd SSHLine
-
#sep TSV::Dumper
-
#sep= TSV::Transformer
-
#serializer TSVAdapter
-
serializer_module TSVAdapter
-
#serve_output SSHLine
-
#set_info Step
-
#set_stream TSV::Dumper
-
setup MultipleResult
-
setup TSV
-
#shard_function Sharder
-
#short_path Step
-
single_method Entity::Property
-
#size Filtered
-
#size FixWidthTable
-
#size PackedIndex
-
#size PKIAdapter
-
#size Sharder
-
#size FWTAdapter
-
#size ShardAdapter
-
#size_annotation_hash_key TSVAdapter
-
#slice TSV
-
#socket_id WorkQueue::Socket
-
#sort TSV
-
#sort_by TSV
-
sort_candidates Workflow::Orchestrator
-
#source_options TSV::Parser
-
#sread WorkQueue::Socket
-
#started? Step
-
#status Step
-
status_color Step
-
#step Step
-
step_file? Path
-
#step_module Workflow
-
str2options TSV
-
str_setup TSV
-
#stream TSV::Transformer
-
#stream Step
-
#stream PackedIndex
-
#stream TSV::Parser
-
#stream TSV::Dumper
-
#streaming? Step
-
#subset Association::Index
-
#subset TSV
-
#summary TSV
-
#swrite WorkQueue::Socket
-
sync SSHLine
-
#synchronize Step
-
synchronize ScoutSemaphore
-
#task Workflow
-
#task Step
-
#task_alias Workflow
-
#task_name Step
-
#task_signature Step
-
#tee_copies Step
-
#terminated? Step
-
thread_each_on_semaphore ScoutSemaphore
-
#timer Workflow::Orchestrator
-
#title Workflow
-
#tmp_path Step
-
#to_double TSV
-
#to_flat TSV
-
#to_hash TSV
-
#to_list TSV
-
#to_matrix Association::Index
-
#to_s TSV
-
#to_single TSV
-
#tokenize_cmd_params Top Level Namespace
-
trace Workflow
-
trace_job_summary Workflow
-
trace_job_times Workflow
-
#translate TSV
-
translate TSV
-
translation_path TSV
-
#transpose TSV
-
#transpose_list TSV
-
#traverse TSV::Transformer
-
#traverse TSV
-
#traverse TSV::Parser
-
traverse Open
-
traverse TSV
-
traverse_add Open
-
#tsv TSV::Transformer
-
tsv Annotation
-
tsv Persist
-
#tsv TSV::Dumper
-
#tsv Path
-
#tsv_options Path
-
#type TSV::Transformer
-
#type Step
-
#type TSV::Parser
-
#type TSV::Dumper
-
#type= TSV::Transformer
-
#unnamed TSV::Transformer
-
#unpersist Entity::Property
-
#unsaved Filtered::Filter
-
#unzip TSV
-
unzip TSV
-
#update Filtered::Filter
-
update_workflow_dir Workflow
-
#updated? Step
-
#usage Workflow
-
#usage Task
-
#value Filtered::Filter
-
#value PKIAdapter
-
#value_size FixWidthTable
-
#values TSVAdapter
-
#values_at PackedIndex
-
#values_at TSVAdapter
-
#values_at FixWidthTable
-
version Scout
-
version_file Association
-
wait_for_jobs Step
-
#waiting? Step
-
#with_filters TSV
-
#with_read TSVAdapter
-
with_semaphore ScoutSemaphore
-
#with_stream TSV::Parser
-
#with_unnamed TSV::Transformer
-
#with_unnamed TSV
-
#with_write TSVAdapter
-
#worker_exception WorkerException
-
#worker_id WorkQueue::Worker
-
#worker_proc WorkQueue
-
#worker_short_id WorkQueue::Worker
-
#workers WorkQueue
-
#workflow Step
-
workflow SSHLine
-
#workflow SSHLine
-
workflow_dir Workflow
-
#workflow_name OffsiteStep
-
workflow_repo Workflow
-
workflows Workflow
-
workload Workflow::Orchestrator
-
#writable TSVAdapter
-
#writable Sharder
-
#write ScoutTKRZW
-
#write WorkQueue
-
#write PackedIndex
-
#write TSVAdapter
-
#write Sharder
-
#write FixWidthTable
-
#write ScoutCabinet
-
#write? TSVAdapter
-
#write? Sharder
-
#write? FixWidthTable
-
#write? ScoutCabinet
-
#write_and_close TSVAdapter
-
#write_and_close ScoutCabinet
-
#write_and_close Sharder
-
#write_and_read Sharder
-
#write_and_read TSVAdapter
-
#write_and_read ScoutCabinet
-
#write_file TSV
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#write_lock TSVAdapter
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#write_sem WorkQueue::Socket
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#zip TSV
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#zip_new TSV