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#% YPetri::Net::State::Features
#% YPetri::Net::State::Feature
#* YPetri::Net::State::Features
#+ YPetri::Net
#+ YPetri::Net::State::Features
#- YPetri::Net
#- YPetri::Net::State::Features
#<< YPetri::Net
#== YPetri::Net::State::Feature::Flux
#== YPetri::Net::State::Feature::Assignment
#== YPetri::Net::State::Feature::Delta
#== YPetri::Net::State::Feature::Marking
#== YPetri::Net::State::Feature::Firing
#== YPetri::Net::State::Feature::Gradient
#== YPetri::Net
#A YPetri::Simulation::Transitions::Types
#A? YPetri::Simulation::TransitionRepresentation::Type_A
#A? YPetri::Simulation::TransitionRepresentation::Type_a
#AT YPetri::Agent::PetriNetAspect
#A_Transitions YPetri::Net::NodeAccess
#A_all_fire! YPetri::Core::Guarded
#A_direct_assignment_closure YPetri::Simulation
#A_transitions YPetri::Net::NodeAccess
#Assignment YPetri::Net::State::Features
#Assignment YPetri::Net::DataSet
#Assignment YPetri::Net::State::Features::Record
Assignment YPetri::Net::State::Feature
Assignment YPetri::Net::State::Features
#Delta YPetri::Place::Features
#Delta YPetri::Net::State::Features::Record
#Delta YPetri::Net::State::Features
Delta YPetri::Net::State::Feature
#Delta YPetri::Net::DataSet
Delta YPetri::Net::State::Features
#Deltas YPetri::Place::Features
Feature YPetri::Net::State
Features YPetri::Net::State
#Firing YPetri::Net::State::Features
Firing YPetri::Net::State::Feature
Firing YPetri::Net::State::Features
#Firing YPetri::Net::State::Features::Record
#Firing YPetri::Net::DataSet
Flux YPetri::Net::State::Feature
#Flux YPetri::Net::State::Features
#Flux YPetri::Net::State::Features::Record
Flux YPetri::Net::State::Features
#Flux YPetri::Net::DataSet
#Fluxes YPetri::Simulation::Timed
#Gradient YPetri::Net::State::Features::Record
#Gradient YPetri::Net::State::Features
Gradient YPetri::Net::State::Features
#Gradient YPetri::Net::DataSet
Gradient YPetri::Net::State::Feature
#Gradient YPetri::Place::Features
#Gradients YPetri::Place::Features
#Im YPetri::Simulation::InitialMarking::Access
#Initial_markings YPetri::Simulation::InitialMarking::Access
#M YPetri::Simulation::MarkingVector::Access
#M_vector YPetri::Simulation::MarkingVector::Access
#Marking YPetri::Net::DataSet
Marking YPetri::Net::State::Features
#Marking YPetri::Net::State::Features::Record
#Marking YPetri::Net::State::Features
Marking YPetri::Net::State::Feature
#Marking_clamps YPetri::Simulation::MarkingClamps::Access
#Marking_vector YPetri::Simulation::MarkingVector::Access
#Net YPetri::Agent::PetriNetAspect
#Nn YPetri::Simulation::Nodes::Access
#Nodes YPetri::Net::NodeAccess
#P_m YPetri::Simulation::MarkingVector::Access
#Place YPetri::Agent::PetriNetAspect
#Places YPetri::Net::NodeAccess
#Pm YPetri::Simulation::MarkingVector::Access
#S YPetri::Simulation::Transitions::Types
#S? YPetri::Simulation::TransitionRepresentation::Type_A
#S? YPetri::Simulation::TransitionRepresentation::Type_s
#S? YPetri::Simulation::TransitionRepresentation::Type_S
#SM YPetri::Simulation::Transitions::Type_S
#S_Transitions YPetri::Net::NodeAccess
#S_transitions YPetri::Net::NodeAccess
#T YPetri::Simulation::Transitions::Types
#T? YPetri::Simulation::TransitionRepresentation::Type_t
#T? YPetri::Simulation::TransitionRepresentation::Type_A
#T? YPetri::Simulation::TransitionRepresentation::Type_T
#TS YPetri::Agent::PetriNetAspect
#TS YPetri::Simulation::Transitions::Types
#TS? YPetri::Transition::Types
#TS? YPetri::Simulation::TransitionRepresentation::Types
#TS_SM YPetri::Simulation
#TS_Transitions YPetri::Net::NodeAccess
#TS_rate_closure YPetri::Simulation
#TS_stoichiometry_matrix YPetri::Simulation
#TS_transitions YPetri::Net::NodeAccess
#TT YPetri::Agent::PetriNetAspect
#T_Transitions YPetri::Net::NodeAccess
#T_fluxes YPetri::Simulation::Timed
#T_transitions YPetri::Net::NodeAccess
#Transition YPetri::Agent::PetriNetAspect
#Transitions YPetri::Net::NodeAccess
#Ts YPetri::Simulation::Transitions::Types
#Ts? YPetri::Simulation::TransitionRepresentation::Types
#Ts? YPetri::Transition::Types
#Ts_Transitions YPetri::Net::NodeAccess
#Ts_gradient_closure YPetri::Simulation
#Ts_transitions YPetri::Net::NodeAccess
[] YPetri::Simulation::MarkingVector
[] YPetri::Net::State::Features
__new__ YPetri::Net::State::Feature::Marking
__new__ YPetri::Simulation
__new__ YPetri::Net::State::Features
__new__ YPetri::Net::DataSet
__new__ YPetri::Net::State::Feature::Firing
__new__ YPetri::Net::State::Feature::Assignment
__new__ YPetri::Net::State::Feature::Flux
__new__ YPetri::Net::State::Feature::Delta
__new__ YPetri::Net::State::Feature::Gradient
#a YPetri::Transition::Type_A
#a YPetri::Simulation::Transitions::Types
#a? YPetri::Simulation::TransitionRepresentation::Type_A
#a? YPetri::Transition::Types
#a? YPetri::Simulation::TransitionRepresentation::Type_a
#a_Transitions YPetri::Net::NodeAccess
#a_transitions YPetri::Net::NodeAccess
#aa YPetri::Place::Arcs
#aa YPetri::Transition::Arcs
aa YPetri::Net::State::Features
#act YPetri::Simulation::TransitionRepresentation::Type_A
#act YPetri::Simulation::Transitions::Type_A
#action YPetri::Simulation::Transitions::Type_A
#action YPetri::Transition::Type_A
#action YPetri::Transition::Type_T
#action YPetri::Transition::Type_t
#action YPetri::Simulation::TransitionRepresentation::Type_A
#action_closure YPetri::Transition
#add YPetri::Agent::Selection
#add YPetri::Place
#alert! YPetri::Simulation::Timed::Recorder
#alert! YPetri::Simulation::Recorder
#alert_user! YPetri::Core::Timed::RungeKutta
annotated_with YPetri::Simulation::MarkingVector
#annotation YPetri::Simulation::MarkingVector
annotation YPetri::Simulation::MarkingVector
#arc YPetri::Place::Arcs
#arc YPetri::Transition::Arcs
#arcs YPetri::Place::Arcs
#arcs YPetri::Transition::Arcs
#assertion YPetri::Place::Guard
#assign_at_indices_closure Matrix
#assignment YPetri::Net::OwnState
#assignment YPetri::Net::DataSet
#assignment YPetri::Net::State::Features::Record
#assignment YPetri::Net::State::Features
assignment YPetri::Net::State::Features
#assignment_action? YPetri::Transition::Types
#assignment_closure YPetri::Simulation::TransitionRepresentation::Type_A
#assignment_closures YPetri::Simulation::Transitions::Type_A
#at YPetri::Simulation::Timed
#back! YPetri::Simulation::Timeless::Recorder
#back! YPetri::Simulation::Timed::Recorder
#block YPetri::Place::Guard
#build_closure YPetri::Simulation::TransitionRepresentation::Type_s
#build_closure YPetri::Simulation::TransitionRepresentation::Type_S
#build_closure YPetri::Simulation::TransitionRepresentation::Type_A
#c2a YPetri::Simulation::Places::Access
#cc_point YPetri::Agent::SimulationAspect
#cc_selection YPetri::Agent::SimulationAspect
#ceiling YPetri::Net::DataSet
#choose_TS_transition YPetri::Core::Timed::Gillespie
#choose_from_discrete_distribution YPetri::Core::Timed::Gillespie
#clamp YPetri::Agent::SimulationAspect
#clamp= YPetri::Simulation::PlaceRepresentation
#clamp_collection YPetri::Agent::SimulationAspect
#clamp_collection YPetri::World::SimulationAspect
#clamp_collection_names YPetri::World::SimulationAspect
#clamp_collections YPetri::World::SimulationAspect
#clamped YPetri::Simulation::Places::Types
#clamped? YPetri::Simulation::PlaceRepresentation
#clamped_pp YPetri::Core
#clear YPetri::Agent::Selection
#cock YPetri::Transition::Cocking
#cocked? YPetri::Transition::Cocking
#codomain YPetri::Transition
#codomain YPetri::Simulation::TransitionRepresentation
#codomain_assignment_code YPetri::Simulation::TransitionRepresentation
#codomain_indices YPetri::Simulation::TransitionRepresentation
#codomain_marking YPetri::Transition::Arcs
#codomain_pp YPetri::Transition::Arcs
column_vector_access_code Matrix
column_vector_assignment_code Matrix
column_vector_increment_by_array_code Matrix
column_vector_increment_code Matrix
#common_guard_closure YPetri::Place::Guarded
#construct_direct_assignment_closure YPetri::Simulation::TransitionRepresentation::Type_A
construct_from_a_place_with_single_upstream_A_transition YPetri::Net::State::Feature::Assignment
#d YPetri::Simulation::TransitionRepresentation::Type_t
#d YPetri::Simulation::TransitionRepresentation::Type_T
#d_all YPetri::Simulation::TransitionRepresentation::Type_T
#default_marking YPetri::Place
#default_marking= YPetri::Place
#default_sampling YPetri::Simulation::Timed
delegate_to_simulation! YPetri::Simulation::Dependency
#delete YPetri::Simulation::PlaceMapping
#delta YPetri::Core::Timed::Ticked
#delta YPetri::Net::DataSet
#delta YPetri::Simulation::TransitionRepresentation::Type_T
#delta YPetri::Core::Timed::RungeKutta
#delta YPetri::Simulation::TransitionRepresentation::Type_a
#delta YPetri::Net::State::Features::Record
#delta YPetri::Simulation::FeatureSet
#delta YPetri::Simulation::Transitions::Type_t
#delta YPetri::Simulation::Transitions::Type_ts
#delta YPetri::Simulation::Transitions::Type_tS
#delta YPetri::Simulation::Transitions::Type_T
#delta YPetri::Core::Timed::Basic
#delta YPetri::Core::Timed::Euler
#delta YPetri::Place::Features
#delta YPetri::Net::State::Features
#delta YPetri::Net::OwnState
#delta YPetri::Core::Timeless
delta YPetri::Net::State::Features
#delta_closure YPetri::Simulation::TransitionRepresentation::Type_ts
#delta_closures YPetri::Simulation::Transitions::Type_ts
#delta_tS YPetri::Core
#delta_timed YPetri::Net::DataSet
delta_timed YPetri::Net::State::Features
#delta_timeless YPetri::Net::DataSet
delta_timeless YPetri::Net::State::Features
#delta_timeless YPetri::Core
#delta_ts YPetri::Core
#deltas YPetri::Place::Features
#dependents YPetri::Place::Arcs
#direct_assignment_closure YPetri::Simulation::TransitionRepresentation::Type_A
#direct_assignment_closures YPetri::Simulation::Transitions::Type_A
#distance YPetri::Net::DataSet
#domain YPetri::Transition
#domain YPetri::Simulation::TransitionRepresentation
#domain_access_code YPetri::Simulation::TransitionRepresentation
#domain_indices YPetri::Simulation::TransitionRepresentation
#domain_marking YPetri::Transition::Arcs
#domain_pp YPetri::Transition::Arcs
#downstream_arcs YPetri::Place::Arcs
#downstream_net YPetri::Place::Arcs
#dump YPetri::Net::State::Features::Record
#dup YPetri::Simulation::Timed
#dup YPetri::Simulation
#enabled? YPetri::Transition::Type_A
#enabled? YPetri::Transition::Type_T
#enabled? YPetri::Transition::Type_t
#euclidean_distance YPetri::Net::State::Features::Record
#exclude_net YPetri::Net
#exclude_place YPetri::Net
#exclude_transition YPetri::Net
#extract_from YPetri::Net::State::Feature::Assignment
#extract_from YPetri::Net::State::Feature::Gradient
#extract_from YPetri::Net::State::Feature::Delta
#extract_from YPetri::Net::State::Features
#extract_from YPetri::Net::State::Feature::Marking
#extract_from YPetri::Net::State::Feature::Firing
#extract_from YPetri::Net::State::Feature::Flux
#f YPetri::Transition::Type_T
#f2a YPetri::Simulation::Places::Access
#features YPetri::Simulation::Recorder
#fetch YPetri::Simulation::MarkingVector
#fetch YPetri::Net::State::Features::Record
#fetch YPetri::Simulation::PlaceMapping
#fir YPetri::Transition::Type_T
#fir YPetri::Transition::Type_t
#fire YPetri::Transition::Type_T
#fire YPetri::Transition::Type_A
#fire YPetri::Transition::Type_t
#fire! YPetri::Transition::Type_A
#fire! YPetri::Transition::Type_T
#fire! YPetri::Core::Timed::Gillespie
#fire! YPetri::Transition::Type_t
#fire_all_assignment_transitions! YPetri::Core
#fire_downstream YPetri::Place::Arcs
#fire_downstream! YPetri::Place::Arcs
#fire_downstream_recursively YPetri::Place::Arcs
#fire_downstream_recursively YPetri::Transition::Arcs
#fire_upstream YPetri::Place::Arcs
#fire_upstream! YPetri::Place::Arcs
#fire_upstream_recursively YPetri::Place::Arcs
#fire_upstream_recursively YPetri::Transition::Arcs
#firing YPetri::Net::State::Features::Record
#firing YPetri::Simulation::Transitions::Type_tS
#firing YPetri::Net::State::Features
#firing YPetri::Net::OwnState
#firing YPetri::Simulation::FeatureSet
#firing YPetri::Net::DataSet
#firing YPetri::Simulation::TransitionRepresentation::Type_TS
#firing YPetri::Simulation::TransitionRepresentation::Type_tS
#firing YPetri::Simulation
firing YPetri::Net::State::Features
#firing_closure YPetri::Simulation::TransitionRepresentation::Type_tS
#firing_closures YPetri::Simulation::Transitions::Type_tS
#firing_vector YPetri::Simulation::Transitions::Type_tS
#firing_vector YPetri::Simulation::Transitions::Type_TS
#firing_vector_tS YPetri::Core
#floor YPetri::Net::DataSet
#flux YPetri::Net::OwnState
#flux YPetri::Net::DataSet
flux YPetri::Net::State::Features
#flux YPetri::Net::State::Features
#flux YPetri::Net::State::Features::Record
#flux_vector YPetri::Core::Timed
#flux_vector_TS YPetri::Core::Timed
#fluxes YPetri::Simulation::Timed
#free YPetri::Simulation::Places::Types
#free? YPetri::Simulation::PlaceRepresentation
#free_codomain_indices YPetri::Simulation::TransitionRepresentation
#free_domain_indices YPetri::Simulation::TransitionRepresentation
#free_pp YPetri::Core
#function YPetri::Transition::Type_t
#function YPetri::Transition::Type_T
#function YPetri::Transition::Type_A
#function YPetri::Simulation::TransitionRepresentation
#functional? YPetri::Net
#functional? YPetri::Transition::Types
#functionless? YPetri::Transition::Types
#g YPetri::Simulation::TransitionRepresentation::Type_T
#g_all YPetri::Simulation::TransitionRepresentation::Type_T
#get YPetri::Agent::Selection
#get YPetri::Agent::HashKeyPointer
#get_features YPetri::Simulation
#gillespie_delta_time YPetri::Core::Timed::Gillespie
#gillespie_step! YPetri::Core::Timed::Gillespie
#gradient YPetri::Simulation::Transitions::Type_Ts
#gradient YPetri::Simulation::Transitions::Type_TS
#gradient YPetri::Simulation::Transitions::Type_T
#gradient YPetri::Place::Features
gradient YPetri::Net::State::Features
#gradient YPetri::Net::OwnState
#gradient YPetri::Net::DataSet
#gradient YPetri::Net::State::Features::Record
#gradient YPetri::Core::Timed
#gradient YPetri::Simulation::TransitionRepresentation::Type_T
#gradient YPetri::Net::State::Features
#gradient_TS YPetri::Core::Timed
#gradient_Ts YPetri::Core::Timed
#gradient_closure YPetri::Simulation::TransitionRepresentation::Type_Ts
#gradient_closures YPetri::Simulation::Transitions::Type_T
#gradient_closures YPetri::Simulation::Transitions::Type_Ts
#gradients YPetri::Place::Features
#guard YPetri::Place::Guarded
#guard! YPetri::Place::Guarded
#guard_Δ! YPetri::Simulation
#guarded YPetri::Simulation
#guarded YPetri::Core
#guards YPetri::Place
#has_default_marking YPetri::Place
#identify YPetri::Agent::SimulationAspect::SimulationPoint
#im YPetri::Simulation::InitialMarking::Access
#im_vector YPetri::Simulation::InitialMarking::Access
#imc_point YPetri::Agent::SimulationAspect
#imc_selection YPetri::Agent::SimulationAspect
#include? YPetri::Net::NodeAccess
#include_net YPetri::Net
#include_place YPetri::Net
#include_place? YPetri::Net::NodeAccess
#include_transition YPetri::Net
#include_transition? YPetri::Net::NodeAccess
included YPetri
#includes? YPetri::Simulation::Nodes::Access
#includes_place? YPetri::Simulation::Places::Access
#includes_transition? YPetri::Simulation::Transitions::Access
#increment_at_indices_closure Matrix
#increment_by_codomain_code YPetri::Simulation::TransitionRepresentation
#increment_closure YPetri::Simulation::MarkingVector
#increment_free_vector YPetri::Core
#increment_marking YPetri::Simulation::MarkingVector::Access
#increment_marking_of_free_places YPetri::Core::Timed::RungeKutta
#increment_marking_vector YPetri::Core::Guarded
#increment_marking_vector YPetri::Core
#increment_marking_vector_closure YPetri::Simulation
#increment_time! YPetri::Core::Timed::RungeKutta
#increment_time! YPetri::Core::Timed
#increment_time! YPetri::Simulation::Timed
#index YPetri::Simulation::MarkingVector
infer_from_node YPetri::Net::State::Feature
infer_from_nodes YPetri::Net::State::Features
#init YPetri::Simulation::TransitionRepresentation::Type_A
#init YPetri::Simulation::TransitionRepresentation::Type_S
#init YPetri::Simulation::TransitionRepresentation::Type_T
#init YPetri::Simulation::TransitionRepresentation::Type_t
#init YPetri::Simulation::TransitionRepresentation::Type_a
#init YPetri::Simulation::TransitionRepresentation::Type_Ts
#init YPetri::Simulation::TransitionRepresentation::Type_ts
#init YPetri::Simulation::TransitionRepresentation::Type_tS
#init YPetri::Simulation::TransitionRepresentation::Type_TS
#init YPetri::Simulation::TransitionRepresentation::Type_s
#initial_marking YPetri::Simulation::PlaceRepresentation
#initial_marking YPetri::Simulation::InitialMarking::Access
#initial_marking YPetri::Agent::SimulationAspect
#initial_marking= YPetri::Simulation::PlaceRepresentation
#initial_marking_collection YPetri::World::SimulationAspect
#initial_marking_collection YPetri::Agent::SimulationAspect
#initial_marking_collection_names YPetri::World::SimulationAspect
#initial_marking_collections YPetri::World::SimulationAspect
#initial_marking_vector YPetri::Simulation::InitialMarking::Access
#initial_markings YPetri::Simulation::InitialMarking::Access
#initial_time YPetri::Simulation::Timed
#initialize YPetri::Net::State::Feature::Firing
#initialize YPetri::Simulation::Timed::Recorder
#initialize YPetri::Agent::SimulationAspect
#initialize YPetri::Agent::Selection
#initialize YPetri::World::SimulationAspect
#initialize YPetri::Core::Timeless
#initialize YPetri::World::PetriNetAspect
#initialize YPetri::Agent::HashKeyPointer
#initialize YPetri::Simulation::TransitionRepresentation
#initialize YPetri::Simulation::Transitions::Type_A
#initialize YPetri::Place::Guard
#initialize YPetri::Transition
#initialize YPetri::Net::State::Feature::Assignment
#initialize YPetri::Simulation
#initialize YPetri::Simulation::PlaceRepresentation
#initialize YPetri::Net::State::Feature::Marking
#initialize YPetri::Core::Timed
#initialize YPetri::World
#initialize YPetri::Place
#initialize YPetri::Agent
#initialize YPetri::Simulation::NodeRepresentation
#initialize YPetri::Core
#initialize YPetri::Net
#initialize YPetri::Simulation::FeatureSet
#initialize YPetri::Net::State::Feature::Flux
#initialize YPetri::Simulation::Recorder
#initialize YPetri::Net::State::Feature::Gradient
#initialize YPetri::Net::State::Feature::Delta
#initialize YPetri::Agent::PetriNetAspect
#inspect YPetri::Net::DataSet
#inspect YPetri::Net::State::Feature::Marking
#inspect YPetri::Net::State::Feature::Firing
#inspect YPetri::Net
#inspect YPetri::Simulation
#inspect YPetri::Net::State::Feature::Assignment
#inspect YPetri::Net::State::Features
#inspect YPetri::Net::State::Feature::Flux
#inspect YPetri::Net::State::Feature::Delta
#inspect YPetri::Net::State::Feature::Gradient
instances YPetri::Net::State::Feature::Assignment
instances YPetri::Net::State::Feature::Delta
instances YPetri::Net::State::Feature::Marking
instances YPetri::Net::State::Feature::Firing
instances YPetri::Net::State::Feature::Gradient
instances YPetri::Net::State::Feature::Flux
#interpolate YPetri::Net::DataSet
#key YPetri::Agent::HashKeyPointer
#keys_to_source_places YPetri::Simulation::PlaceMapping
#label YPetri::Net::State::Feature::Firing
#label YPetri::Net::State::Feature::Marking
#label YPetri::Net::State::Feature::Flux
#label YPetri::Net::State::Feature::Gradient
#label YPetri::Net::State::Feature::Delta
#label YPetri::Net::State::Feature::Assignment
#labels YPetri::Net::State::Features
load YPetri::Net::State::Features::Record
load YPetri::Simulation::Nodes
#load YPetri::Simulation::Nodes
#load YPetri::Simulation::PlaceMapping
load YPetri::Simulation::PlaceMapping
#load_file YPetri::Agent::SimulationAspect
#local_net YPetri::Place::Arcs
#m YPetri::Simulation::PlaceRepresentation
#m YPetri::Simulation::MarkingVector::Access
#m YPetri::Net::OwnState
#m YPetri::Place
#m= YPetri::Simulation::PlaceRepresentation
#m= YPetri::Place
#m_vector YPetri::Simulation::MarkingVector::Access
#m_vector_index YPetri::Simulation::PlaceRepresentation
#marking YPetri::Simulation::FeatureSet
#marking YPetri::Net::State::Features
marking YPetri::Net::State::Features
#marking YPetri::Simulation::Places
#marking YPetri::Net::OwnState
#marking YPetri::Net::DataSet
#marking YPetri::Net::State
#marking YPetri::Place
#marking YPetri::Net::State::Features::Record
#marking= YPetri::Simulation::PlaceRepresentation
#marking= YPetri::Place
#marking_clamp YPetri::Simulation::PlaceRepresentation
#marking_clamp YPetri::Simulation::MarkingClamps::Access
#marking_clamps YPetri::Simulation::MarkingClamps::Access
#marking_of_clamped_places YPetri::Core
#marking_of_free_places YPetri::Core
#marking_vector YPetri::Simulation::MarkingVector::Access
#markings YPetri::Net::State
#n YPetri::Simulation::Nodes::Access
#net YPetri::World::PetriNetAspect
#net YPetri::Agent::PetriNetAspect
#net YPetri::World::Dependency
#net_point YPetri::Agent::PetriNetAspect
#net_point_reset YPetri::Agent::PetriNetAspect
#net_selection YPetri::Agent::PetriNetAspect
#nets YPetri::World::PetriNetAspect
new YPetri::Net::State::Feature::Flux
new YPetri::Net::State::Feature::Assignment
new YPetri::Net::State::Features
new YPetri::Net::State::Feature::Marking
new YPetri::Net::DataSet
new YPetri::Simulation
new YPetri::Net::State::Feature::Firing
new YPetri::Net::State::Feature::Delta
new YPetri::Net::State::Feature::Gradient
#new_recording YPetri::Simulation::Recorder
#new_recording YPetri::Simulation::Timed::Recorder
#new_simulation YPetri::World::SimulationAspect
#new_simulation YPetri::Agent::SimulationAspect
#next_event YPetri::Simulation::Timeless::Recorder
#next_time YPetri::Simulation::Timed::Recorder
#nn YPetri::Agent::PetriNetAspect
#nn YPetri::Simulation::Nodes::Access
#nnn YPetri::Simulation::Nodes::Access
#node YPetri::World::Dependency
#node YPetri::Net::NodeAccess
#nodes YPetri::Net::NodeAccess
#nonstoichiometric? YPetri::Transition::Types
of YPetri::Net::State::Feature::Flux
of YPetri::Net::State::Feature::Firing
of YPetri::Net
of YPetri::Net::State::Feature::Marking
#p YPetri::Simulation::Places::Access
#p_m YPetri::Simulation::MarkingVector::Access
#pa YPetri::Transition::Type_T
#pa YPetri::Transition::Type_t
parametrize YPetri::Net::State::Feature::Flux
parametrize YPetri::Net::State::Feature::Marking
parametrize YPetri::Net::State::Feature::Gradient
parametrize YPetri::Net::State::Features
parametrize YPetri::Net::State::Feature
parametrize YPetri::Net::State::Feature::Assignment
parametrize YPetri::Net::State
parametrize YPetri::Net::State::Feature::Firing
parametrize YPetri::Net::State::Feature::Delta
#pd YPetri::Place::Features
#pfiring YPetri::Simulation
#pflux YPetri::Simulation::Timed
#pg YPetri::Place::Features
#pl YPetri::Agent::PetriNetAspect
#place YPetri::World::PetriNetAspect
#place YPetri::World::Dependency
#place YPetri::Transition::UsableWithoutWorld
#place YPetri::Net::NodeAccess
#place YPetri::Net::State::Feature::Marking
#place YPetri::Place::Guard
#place YPetri::Transition
#place YPetri::Net::State::Feature::Assignment
#place YPetri::Net::State::Feature::Gradient
#place YPetri::Net::State::Feature::Delta
#places YPetri::World::PetriNetAspect
#places YPetri::Net::NodeAccess
#plot YPetri::Net::DataSet
#plot YPetri::Agent::SimulationAspect
#plot_delta YPetri::Agent::SimulationAspect
#plot_firing YPetri::Agent::SimulationAspect
#plot_flux YPetri::Agent::SimulationAspect
#plot_gradient YPetri::Agent::SimulationAspect
#plot_marking YPetri::Agent::SimulationAspect
#pm YPetri::Simulation::MarkingVector::Access
#pn YPetri::Agent::PetriNetAspect
#pp YPetri::Core
#precedents YPetri::Place::Arcs
#pretty_print YPetri::Simulation::MarkingVector
#print YPetri::Net::DataSet
#print YPetri::Net::State::Features::Record
#print_recording YPetri::Agent::SimulationAspect
#push YPetri::Simulation::Transitions
#push YPetri::Simulation::Places
#quantum YPetri::Simulation::PlaceRepresentation
#quantum YPetri::Place
#rate YPetri::Simulation::TransitionRepresentation::Type_TS
#rate_closure YPetri::Simulation::TransitionRepresentation::Type_TS
#rate_closure YPetri::Transition
#rate_closures YPetri::Simulation::Transitions::Type_TS
#rate_vector YPetri::Simulation::Transitions::Type_TS
#reconstruct YPetri::Net::State::Features::Record
#reconstruct YPetri::Net::DataSet
#record YPetri::Net::DataSet
#recorder YPetri::Simulation
#recording YPetri::Simulation::Recorder
#records YPetri::Net::DataSet
#reduce_features YPetri::Net::State::Features
#reduce_features YPetri::Net::DataSet
#resample YPetri::Net::DataSet
#reset YPetri::Agent::SimulationAspect::SimulationPoint
#reset YPetri::Agent::HashKeyPointer
#reset! YPetri::Simulation::Recorder
#reset! YPetri::Simulation::Timed
#reset! YPetri::Simulation::Timeless::Recorder
#reset! YPetri::Net::OwnState
#reset! YPetri::Simulation
#reset! YPetri::Simulation::Timed::Recorder
#reset! YPetri::Simulation::MarkingVector
#reset_marking YPetri::Place
#reset_time! YPetri::Core::Timed::RungeKutta
#rng YPetri::Core::Timed::Gillespie
#run YPetri::Simulation::Timed
#run! YPetri::Simulation::Timed
#run! YPetri::Agent::SimulationAspect
#run_upto YPetri::Simulation::Timed
#s YPetri::Simulation::Transitions::Types
#s YPetri::Transition
#s? YPetri::Simulation::TransitionRepresentation::Type_s
#s? YPetri::Simulation::TransitionRepresentation::Type_A
#s? YPetri::Simulation::TransitionRepresentation::Type_S
#s_Transitions YPetri::Net::NodeAccess
#s_transitions YPetri::Net::NodeAccess
#sampling YPetri::Simulation::Timed::Recorder
#save_file YPetri::Agent::SimulationAspect
#select YPetri::Simulation::MarkingVector
#series YPetri::Net::DataSet
#set YPetri::Agent::SimulationAspect::SimulationPoint
#set YPetri::Agent::HashKeyPointer
#set YPetri::Simulation::MarkingClamps
#set YPetri::Agent::Selection
#set YPetri::Simulation::InitialMarking
#set YPetri::Simulation::MarkingVector
#set YPetri::Simulation::PlaceMapping
#set_clamp_collection YPetri::World::SimulationAspect
#set_initial_marking_collection YPetri::World::SimulationAspect
#set_marking_clamp YPetri::Simulation::MarkingClamps::Access
#set_sampling YPetri::Simulation::Timed
#set_sampling YPetri::Agent::SimulationAspect
#set_simulation_method YPetri::Simulation::Timeless
#set_simulation_method YPetri::Simulation::Timed
#set_simulation_method YPetri::Agent::SimulationAspect
#set_simulation_settings_collection YPetri::World::SimulationAspect
#set_step YPetri::Simulation::Timed
#set_step YPetri::Agent::SimulationAspect
#set_target_time YPetri::Agent::SimulationAspect
#set_time YPetri::Simulation::Timed
#set_time YPetri::Agent::SimulationAspect
#set_user_alert_closure YPetri::Core::Timed::RungeKutta
#settings YPetri::Simulation::Timed
#settings YPetri::Net::DataSet
#settings YPetri::Simulation
#simulation YPetri::Agent::SimulationAspect
#simulation YPetri::Net
#simulation YPetri::Core
#simulation YPetri::World::SimulationAspect
#simulation_method YPetri::Core
#simulation_point YPetri::Agent::SimulationAspect
#simulation_selection YPetri::Agent::SimulationAspect
#simulation_settings_collection YPetri::World::SimulationAspect
#simulation_settings_collection YPetri::Agent::SimulationAspect
#simulation_settings_collection_names YPetri::World::SimulationAspect
#simulation_settings_collections YPetri::World::SimulationAspect
#simulations YPetri::World::SimulationAspect
#size YPetri::Simulation::MarkingVector
#source YPetri::Simulation::NodeRepresentation
#sources YPetri::Simulation::Nodes
#sparse_stoichiometry_vector YPetri::Simulation::TransitionRepresentation::Type_S
#sparse_sv YPetri::Simulation::TransitionRepresentation::Type_S
#ssc_point YPetri::Agent::SimulationAspect
#ssc_selection YPetri::Agent::SimulationAspect
starting YPetri::Simulation::MarkingVector
#state YPetri::Agent::SimulationAspect
#state YPetri::Simulation::MarkingVector::Access
#state YPetri::Net::OwnState
#state YPetri::Core
#state YPetri::Net::State::Features::Record
#step YPetri::Simulation::Timed
#step! YPetri::Core::Timed::RungeKutta
#step! YPetri::Core::Timed::Gillespie
#step! YPetri::Core::Timeless::Basic
#step! YPetri::Core::Timed::Ticked
#step! YPetri::Core::Timed::Basic
#step! YPetri::Core::Timed
#stoichio YPetri::Transition
#stoichiometric? YPetri::Transition::Types
#stoichiometry YPetri::Simulation::TransitionRepresentation::Type_S
#stoichiometry YPetri::Transition
#stoichiometry_matrix YPetri::Simulation::Transitions::Type_S
#subset YPetri::Simulation::Nodes
#subtract YPetri::Agent::Selection
#subtract YPetri::Place
#t YPetri::Transition::Types
#t YPetri::Simulation::Transitions::Access
#t YPetri::Simulation::Transitions::Types
#t? YPetri::Simulation::TransitionRepresentation::Type_t
#t? YPetri::Simulation::TransitionRepresentation::Type_T
#t? YPetri::Simulation::TransitionRepresentation::Type_A
#tS YPetri::Simulation::Transitions::Types
#tS? YPetri::Transition::Types
#tS? YPetri::Simulation::TransitionRepresentation::Types
#tS_SM YPetri::Simulation
#tS_Transitions YPetri::Net::NodeAccess
#tS_firing_closure YPetri::Simulation
#tS_stoichiometry_matrix YPetri::Simulation
#tS_transitions YPetri::Net::NodeAccess
#t_Transitions YPetri::Net::NodeAccess
#t_firing YPetri::Simulation
#t_fluxes YPetri::Simulation::Timed
#t_transitions YPetri::Net::NodeAccess
#target_time YPetri::Simulation::Timed
#time YPetri::Simulation::Timed
#time YPetri::Core::Timed
#time_range YPetri::Simulation::Timed
#time_unit YPetri::Simulation::Timed
timed YPetri::Net::State::Feature::Firing
timed YPetri::Net::State::Feature::Delta
#timed? YPetri::Simulation::Timeless
#timed? YPetri::Transition::Types
#timed? YPetri::Simulation::Timed
#timed? YPetri::Core::Timeless
#timed? YPetri::Net::DataSet
#timed? YPetri::Core::Timed
#timed? YPetri::Net
#timed? YPetri::Net::State::Feature::Firing
#timed? YPetri::Net::State::Feature::Delta
timeless YPetri::Net::State::Feature::Delta
timeless YPetri::Net::State::Feature::Firing
#timeless? YPetri::Transition::Types
#timeless? YPetri::Core::Timeless
#timeless? YPetri::Core::Timed
#timeless? YPetri::Net::State::Feature::Firing
#timeless? YPetri::Net::State::Feature::Delta
#tn YPetri::Agent::PetriNetAspect
#to_a YPetri::Simulation::MarkingVector
#to_assignment_closure YPetri::Simulation::TransitionRepresentation::Type_A
#to_assignment_closure YPetri::Simulation::Transitions::Type_A
#to_csv YPetri::Net::DataSet
#to_delta_closure YPetri::Simulation::TransitionRepresentation::Type_ts
#to_delta_closure YPetri::Simulation::Transitions::Type_ts
#to_direct_assignment_closure YPetri::Simulation::Transitions::Type_A
#to_firing_closure YPetri::Simulation::Transitions::Type_tS
#to_firing_closure YPetri::Simulation::TransitionRepresentation::Type_tS
#to_gradient_closure YPetri::Simulation::TransitionRepresentation::Type_Ts
#to_gradient_closure YPetri::Simulation::Transitions::Type_Ts
#to_h YPetri::Simulation::MarkingVector
#to_hash YPetri::Simulation::MarkingVector
#to_hash_with_source_places YPetri::Simulation::MarkingVector
#to_rate_closure YPetri::Simulation::TransitionRepresentation::Type_TS
#to_rate_closure YPetri::Simulation::Transitions::Type_TS
#to_record YPetri::Net::State
#to_s YPetri::Net::State::Feature::Flux
#to_s YPetri::Net::State::Features
#to_s YPetri::Simulation::Timed
#to_s YPetri::Net::DataSet
#to_s YPetri::Simulation
#to_s YPetri::Net
#to_s YPetri::Net::State::Feature::Delta
#to_s YPetri::Net::State::Feature::Marking
#to_s YPetri::Net::State::Feature::Firing
#to_s YPetri::Net::State::Feature::Gradient
#to_s YPetri::Simulation::NodeRepresentation
#to_s YPetri::Net::State::Feature::Assignment
#tr YPetri::Agent::PetriNetAspect
#transition YPetri::Transition::UsableWithoutWorld
#transition YPetri::Net::State::Feature::Assignment
#transition YPetri::Net::State::Feature::Firing
#transition YPetri::World::PetriNetAspect
#transition YPetri::Net::State::Feature::Flux
#transition YPetri::World::Dependency
#transition YPetri::Net::NodeAccess
#transition YPetri::Transition
#transitions YPetri::Net::State::Feature::Gradient
#transitions YPetri::Net::State::Feature::Delta
#transitions YPetri::World::PetriNetAspect
#transitions YPetri::Net::NodeAccess
#ts YPetri::Simulation::Transitions::Types
#ts? YPetri::Simulation::TransitionRepresentation::Types
#ts? YPetri::Transition::Types
#ts_Transitions YPetri::Net::NodeAccess
#ts_delta_closure YPetri::Simulation
#ts_transitions YPetri::Net::NodeAccess
#type YPetri::Net::State::Feature::Assignment
#type YPetri::Net::State::Feature::Gradient
#type YPetri::Net::State::Feature::Marking
#type YPetri::Net::State::Feature::Firing
#type YPetri::Net::State::Feature::Delta
#type YPetri::Net::State::Feature::Flux
#type YPetri::Transition::Types
#type YPetri::Net::DataSet
#type YPetri::Simulation::TransitionRepresentation::Types
#type_full YPetri::Transition::Types
#type_init YPetri::Simulation::TransitionRepresentation::Types
#uncock YPetri::Transition::Cocking
#uncocked? YPetri::Transition::Cocking
#update_m YPetri::Simulation::MarkingVector::Access
#update_marking YPetri::Simulation::MarkingVector::Access
#update_next_gillespie_time YPetri::Core::Timed::Gillespie
#upstream_arcs YPetri::Place::Arcs
#upstream_net YPetri::Place::Arcs
#uv YPetri::Place
#validate YPetri::Place::Guard
#value YPetri::Place
#value= YPetri::Place
#vector YPetri::Simulation::PlaceMapping
#visualize YPetri::Net::Visualization
#what_is_hash_value YPetri::Agent::HashKeyPointer
#world YPetri::Agent
#y_petri_agent YPetri::DSL
zero YPetri::Simulation::MarkingVector
#zero_action YPetri::Transition
#zero_gradient YPetri::Simulation::Timed
#Δ YPetri::Simulation::Transitions::Type_ts
#Δ YPetri::Simulation::Transitions::Type_tS
#Δ YPetri::Simulation::Transitions::Type_t
#Δ YPetri::Simulation::Transitions::Type_T
#Δ YPetri::Simulation::TransitionRepresentation::Type_ts
#Δ YPetri::Simulation::TransitionRepresentation::Type_T
#Δ YPetri::Simulation::TransitionRepresentation::Type_tS
#∇ YPetri::Simulation::Transitions::Type_Ts
#∇ YPetri::Simulation::Transitions::Type_TS
#∇ YPetri::Simulation::TransitionRepresentation::Type_TS
#∇ YPetri::Simulation::TransitionRepresentation::Type_Ts