Method: BioDSL::ClipPrimer#initialize

Defined in:
lib/BioDSL/commands/clip_primer.rb

#initialize(options) ⇒ ClipPrimer

Constructor for ClipPrimer.

Parameters:

  • options (Hash) —

    Options hash.

Options Hash (options):

  • :primer (String) —

    Primer used for matching.

  • :direction (Symbol) —

    Direction for clipping.

  • :search_distance (Integer) —

    Search distance.

  • :reverse_complment (Boolean) —

    Flag indicating that primer should be reverse complemented.



122
123
124
125
126
127
128
129
130
131
 
# File 'lib/BioDSL/commands/clip_primer.rb', line 122

def initialize(options)
  @options = options
  defaults
  check_options

  @primer  = primer
  @mis     = calc_mis
  @ins     = calc_ins
  @del     = calc_del
end