Class: Ensembl::Variation::Source

Inherits:

DBConnection

• Object
• ActiveRecord::Base
• DBRegistry::Base
• DBConnection
• Ensembl::Variation::Source

Defined in:

lib/bio-ensembl/variation/activerecord.rb

Overview

The Source class gives information on the different databases and SNP panels used to retrieve the data

This class uses ActiveRecord to access data in the Ensembl database. See the general documentation of the Ensembl module for more information on what this means and what methods are available.

Instance Method Summary

• #somatic_status ⇒ Object

  workaround as ActiveRecord do not parse SET field in MySQL.

Methods inherited from DBConnection

connect, ensemblgenomes_connect

Methods inherited from DBRegistry::Base

generic_connect, get_info, get_name_from_db

Instance Method Details

#somatic_status ⇒ Object

workaround as ActiveRecord do not parse SET field in MySQL

# File 'lib/bio-ensembl/variation/activerecord.rb', line 290

def somatic_status # workaround as ActiveRecord do not parse SET field in MySQL
  "#{attributes_before_type_cast['somatic_status']}" 
end