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bio-ensembl
(1.1.0)
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Documentation for bio-ensembl (1.1.0)
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README
Namespace Listing A-Z
Top Level Namespace
A
Allele
(Ensembl::Variation)
AlleleGroup
(Ensembl::Variation)
AlleleGroupAllele
(Ensembl::Variation)
Analysis
(Ensembl::Core)
AnalysisDescription
(Ensembl::Core)
AssemblyException
(Ensembl::Core)
AssemblyLink
(Ensembl::Core)
AssociateStudy
(Ensembl::Variation)
AttribType
(Ensembl::Variation)
AttribType
(Ensembl::Core)
B
Base
(ActiveRecord)
Base
(Ensembl::DBRegistry)
C
Collection
(Ensembl::Core)
CompressedGenotypeSingleBp
(Ensembl::Variation)
ConsequenceMapping
(Ensembl::Variation)
CoordSystem
(Ensembl::Core)
Core
(Ensembl)
D
DBConnection
(Ensembl::Core)
DBConnection
(Ensembl::Variation)
DBRegistry
(Ensembl)
DensityFeature
(Ensembl::Core)
DensityType
(Ensembl::Core)
Dna
(Ensembl::Core)
DnaAlignFeature
(Ensembl::Core)
DummyDBConnection
(Ensembl)
E
Ensembl
Exon
(Ensembl::Core)
ExonStableId
(Ensembl::Core)
ExonSupportingFeature
(Ensembl::Core)
ExonTranscript
(Ensembl::Core)
ExternalDb
(Ensembl::Core)
ExternalSynonym
(Ensembl::Core)
F
FailedDescription
(Ensembl::Variation)
FailedVariation
(Ensembl::Variation)
FeatureType
(Ensembl::Variation)
FlankingSequence
(Ensembl::Variation)
G
Gap
(Ensembl::Core)
Gene
(Ensembl::Core)
GeneAttrib
(Ensembl::Core)
GeneStableId
(Ensembl::Core)
GoXref
(Ensembl::Core)
H
Httag
(Ensembl::Variation)
I
IRB
Individual
(Ensembl::Variation)
IndividualGenotypeMultipleBp
(Ensembl::Variation)
IndividualPopulation
(Ensembl::Variation)
IndividualType
(Ensembl::Variation)
Intron
(Ensembl::Core)
K
Karyotype
(Ensembl::Core)
M
Map
(Ensembl::Core)
Marker
(Ensembl::Core)
MarkerFeature
(Ensembl::Core)
MarkerMapLocation
(Ensembl::Core)
MarkerSynonym
(Ensembl::Core)
Meta
(Ensembl::Variation)
Meta
(Ensembl::Core)
MetaCoord
(Ensembl::Core)
MetaCoord
(Ensembl::Variation)
MiscAttrib
(Ensembl::Core)
MiscFeature
(Ensembl::Core)
MiscFeatureMiscSet
(Ensembl::Core)
MiscSet
(Ensembl::Core)
O
ObjectXref
(Ensembl::Core)
OligoArray
(Ensembl::Core)
OligoFeature
(Ensembl::Core)
OligoProbe
(Ensembl::Core)
P
Phenotype
(Ensembl::Variation)
PolyphenPrediction
(Ensembl::Variation)
Population
(Ensembl::Variation)
PopulationGenotype
(Ensembl::Variation)
PopulationStructure
(Ensembl::Variation)
PredictionExon
(Ensembl::Core)
PredictionTranscript
(Ensembl::Core)
ProteinAlignFeature
(Ensembl::Core)
ProteinFeature
(Ensembl::Core)
ProteinInfo
(Ensembl::Variation)
ProteinPosition
(Ensembl::Variation)
R
ReadCoverage
(Ensembl::Variation)
RegulatoryFactor
(Ensembl::Core)
RegulatoryFeature
(Ensembl::Core)
RepeatConsensus
(Ensembl::Core)
RepeatFeature
(Ensembl::Core)
S
Sample
(Ensembl::Variation)
SampleSynonym
(Ensembl::Variation)
SeqRegion
(Ensembl::Core)
SeqRegion
(Ensembl::Variation)
SeqRegionAttrib
(Ensembl::Core)
Session
(Ensembl)
SiftPrediction
(Ensembl::Variation)
SimpleFeature
(Ensembl::Core)
Slice
(Ensembl::Core)
Sliceable
(Ensembl::Core)
Source
(Ensembl::Variation)
StructuralVariation
(Ensembl::Variation)
Study
(Ensembl::Variation)
SubsnpHandle
(Ensembl::Variation)
SupportingStructuralVariation
(Ensembl::Variation)
T
TaggedVariationFeature
(Ensembl::Variation)
Transcript
(Ensembl::Core)
TranscriptAttrib
(Ensembl::Core)
TranscriptStableId
(Ensembl::Core)
TranscriptSupportingFeature
(Ensembl::Core)
TranscriptVariation
(Ensembl::Variation)
Translation
(Ensembl::Core)
TranslationAttrib
(Ensembl::Core)
TranslationStableId
(Ensembl::Core)
V
Variation
(Ensembl)
Variation
(Ensembl::Variation)
VariationAnnotation
(Ensembl::Variation)
VariationFeature
(Ensembl::Variation)
VariationGroup
(Ensembl::Variation)
VariationGroupFeature
(Ensembl::Variation)
VariationGroupVariation
(Ensembl::Variation)
VariationSet
(Ensembl::Variation)
VariationSetStructure
(Ensembl::Variation)
VariationSetVariation
(Ensembl::Variation)
VariationSynonym
(Ensembl::Variation)
X
Xref
(Ensembl::Core)