Class: Bio::MAF::MinSizeFilter

Inherits:

Filter

Object
Filter
Bio::MAF::MinSizeFilter

show all

Defined in:: lib/bio/maf/index.rb

Constant Summary

Constants included from KVHelpers

KVHelpers::CHROM_BIN_PREFIX_FMT, KVHelpers::KEY_FMT, KVHelpers::KEY_SCAN_FMT, KVHelpers::VAL_FMT, KVHelpers::VAL_IDX_OFFSET_FMT, KVHelpers::VAL_N_SEQ_FMT, KVHelpers::VAL_SPECIES_FMT, KVHelpers::VAL_TEXT_SIZE_FMT

Instance Method Summary collapse

#initialize(n, idx) ⇒ MinSizeFilter constructor
A new instance of MinSizeFilter.
#match(entry) ⇒ Object

Methods inherited from Filter

Methods included from KVHelpers

bin_start_prefix, extract_index_offset, extract_n_sequences, extract_species_vec, extract_text_size, unpack_key

Constructor Details

#initialize(n, idx) ⇒ `MinSizeFilter`

Returns a new instance of MinSizeFilter.



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# File 'lib/bio/maf/index.rb', line 917

def initialize(n, idx)
  @n = n
end

Instance Method Details

#match(entry) ⇒ `Object`



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# File 'lib/bio/maf/index.rb', line 920

def match(entry)
  extract_text_size(entry) >= @n
end