Module: CagnutGatk

Defined in:

lib/cagnut_gatk.rb,
lib/cagnut_gatk/base.rb,
lib/cagnut_gatk/util.rb,
lib/cagnut_gatk/version.rb,
lib/cagnut_gatk/check_tools.rb,
lib/cagnut_gatk/configuration.rb,
lib/cagnut_gatk/functions/count_read.rb,
lib/cagnut_gatk/functions/print_reads.rb,
lib/cagnut_gatk/functions/variant_eval.rb,
lib/cagnut_gatk/functions/indel_realigner.rb,
lib/cagnut_gatk/functions/haplotype_caller.rb,
lib/cagnut_gatk/functions/base_recalibrator.rb,
lib/cagnut_gatk/functions/depth_of_coverage.rb,
lib/cagnut_gatk/functions/unified_genotyper.rb,
lib/cagnut_gatk/functions/analyze_covariates.rb,
lib/cagnut_gatk/functions/variant_filtration.rb,
lib/cagnut_gatk/functions/realigner_target_creator.rb

Defined Under Namespace

Modules: CheckTools Classes: AnalyzeCovariates, Base, BaseRecalibrator, Configuration, CountRead, DepthOfCoverage, HaplotypeCaller, IndelRealigner, PrintReads, RealignerTargetCreator, UnifiedGenotyper, Util, VariantEval, VariantFiltration

Constant Summary

VERSION =

"0.3.2"

Class Method Summary

• .config ⇒ Object

Class Method Details

.config ⇒ Object

# File 'lib/cagnut_gatk.rb', line 5

def config
  @config ||= begin
    CagnutGatk::Configuration.load(Cagnut::Configuration.config, Cagnut::Configuration.params['gatk'])
    CagnutGatk::Configuration.instance
  end
end