Module: Mspire::Ident::ProteinLike

Included in:

Protein

Defined in:

lib/mspire/ident/protein.rb

Instance Attribute Summary

• #description ⇒ Object

  a description of the protein.

• #id ⇒ Object

  an id for the protein.

• #sequence ⇒ Object (also: #seq)

  the protein sequence.

Instance Method Summary

• #gene_id ⇒ Object

  if the GN=(+) regexp is found in the description, returns the first match, or nil if not found.

Instance Attribute Details

#description ⇒ Object

a description of the protein

# File 'lib/mspire/ident/protein.rb', line 15

def description
  @description
end

#id ⇒ Object

an id for the protein

# File 'lib/mspire/ident/protein.rb', line 7

def id
  @id
end

#sequence ⇒ Object Also known as: seq

the protein sequence

# File 'lib/mspire/ident/protein.rb', line 10

def sequence
  @sequence
end

Instance Method Details

#gene_id ⇒ Object

if the GN=(+) regexp is found in the description, returns the first match, or nil if not found

# File 'lib/mspire/ident/protein.rb', line 19

def gene_id
  description.andand[/ GN=(\w+) ?/, 1]
end