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Top Level Namespace
Array < ObjectTop Level Namespace
Bio::FastaFormat < ObjectBio
Bio::FlatFile < ObjectBio
CVTop Level Namespace
- Param < StructCV
- ReferenceableParamGroupRef < ObjectCV
EnumerableTop Level Namespace
IO < ObjectTop Level Namespace
MergeTop Level Namespace
MspireTop Level Namespace
- Bin < RangeMspire
- CVMspire
  - OboMspire::CV
  - ParamMspire::CV
  - ParamableMspire::CV
- CommandlineMspire
- Digester < ObjectMspire
- ErrorRateMspire
  - DecoyMspire::ErrorRate
  - QvalueMspire::ErrorRate
- FastaMspire
- IdentMspire
  - PeptideMspire::Ident
    Db < ObjectMspire::Ident::Peptide
    Creator < ObjectMspire::Ident::Peptide::Db
    IO < ObjectMspire::Ident::Peptide::Db
  - PeptideHit < ObjectMspire::Ident
    QvalueMspire::Ident::PeptideHit
  - PeptideHitLikeMspire::Ident
  - Pepxml < ObjectMspire::Ident
    AminoacidModification < ObjectMspire::Ident::Pepxml
    EnzymaticSearchConstraint < HashMspire::Ident::Pepxml
    MsmsPipelineAnalysis < ObjectMspire::Ident::Pepxml
    MsmsRunSummary < ObjectMspire::Ident::Pepxml
    Parameters < HashMspire::Ident::Pepxml
    SampleEnzyme < ObjectMspire::Ident::Pepxml
    SearchDatabase < ObjectMspire::Ident::Pepxml
    SearchHit < ObjectMspire::Ident::Pepxml
    Simple < StructMspire::Ident::Pepxml::SearchHit
    SearchResult < ObjectMspire::Ident::Pepxml
    SearchSummary < ObjectMspire::Ident::Pepxml
    SpectrumQuery < ObjectMspire::Ident::Pepxml
    TerminalModification < ObjectMspire::Ident::Pepxml
  - Protein < ObjectMspire::Ident
  - ProteinGroup < ArrayMspire::Ident
  - ProteinLikeMspire::Ident
  - Search < ObjectMspire::Ident
  - SearchGroupMspire::Ident
  - SearchLikeMspire::Ident
- ImzmlMspire
  - DataArrayInfo < StructMspire::Imzml
  - Writer < ObjectMspire::Imzml
    CommandlineMspire::Imzml::Writer
- Isotope < ObjectMspire
  - AAMspire::Isotope
  - DistributionMspire::Isotope
  - Updater < ObjectMspire::Isotope
- MascotMspire
- MassMspire
  - AAMspire::Mass
- MolecularFormula < HashMspire
- Mzml < ObjectMspire
  - Activation < ObjectMspire::Mzml
  - Analyzer < ObjectMspire::Mzml
  - CV < ObjectMspire::Mzml
  - Chromatogram < ObjectMspire::Mzml
  - ChromatogramList < IOIndexableListMspire::Mzml
  - ComponentMspire::Mzml
  - Contact < ObjectMspire::Mzml
  - ConvenienceMspire::Mzml
  - DataArray < ArrayMspire::Mzml
  - DataArrayContainerLikeMspire::Mzml
  - DataProcessing < ObjectMspire::Mzml
  - DefaultMspire::Mzml
  - Detector < ObjectMspire::Mzml
  - FileContent < ObjectMspire::Mzml
  - FileDescription < ObjectMspire::Mzml
  - IOIndex < ObjectMspire::Mzml
  - IOIndexableList < SimpleDelegatorMspire::Mzml
  - Index < ArrayMspire::Mzml
  - IndexList < ArrayMspire::Mzml
  - InstrumentConfiguration < ObjectMspire::Mzml
  - IsolationWindow < ObjectMspire::Mzml
  - ListMspire::Mzml
  - ParserMspire::Mzml
  - Precursor < ObjectMspire::Mzml
  - ProcessingMethod < ObjectMspire::Mzml
  - Product < ObjectMspire::Mzml
  - ReaderMspire::Mzml
  - ReferenceableParamGroup < ObjectMspire::Mzml
  - Run < ObjectMspire::Mzml
  - Sample < ObjectMspire::Mzml
  - Scan < ObjectMspire::Mzml
  - ScanList < ArrayMspire::Mzml
  - ScanNumbersNotFound < ExceptionMspire::Mzml
  - ScanNumbersNotUnique < ExceptionMspire::Mzml
  - ScanSettings < ObjectMspire::Mzml
  - ScanWindow < ObjectMspire::Mzml
  - SelectedIon < ObjectMspire::Mzml
  - Software < ObjectMspire::Mzml
  - Source < ObjectMspire::Mzml
  - SourceFile < ObjectMspire::Mzml
  - Spectrum < ObjectMspire::Mzml
  - SpectrumList < IOIndexableListMspire::Mzml
- OBO < ObjectMspire
- Peak < ArrayMspire
- Peaklist < ArrayMspire
- Plms1 < ObjectMspire
- QuantMspire
  - ProteinGroupComparisonMspire::Quant
    Qspec < ObjectMspire::Quant::ProteinGroupComparison
  - Qspec < ObjectMspire::Quant
    Results < StructMspire::Quant::Qspec
- Spectrum < ObjectMspire
  - Centroid < ArrayMspire::Spectrum
  - CentroidishMspire::Spectrum
- SpectrumLikeMspire
- TaggedPeak < ArrayMspire
- UserParam < StructMspire
Numeric < ObjectTop Level Namespace
OboTop Level Namespace
- Ontology < ObjectObo
- Stanza < ObjectObo