Class: OpenTox::Algorithm::BBRC

Inherits:

Fminer

• Object
• Fminer
• OpenTox::Algorithm::BBRC

Defined in:

lib/algorithm.rb

Overview

Backbone Refinement Class mining (bbrc.maunz.de/)

Instance Attribute Summary

Attributes inherited from Fminer

#all_activities, #compounds, #db_class_sizes, #minfreq, #prediction_feature, #smi, #training_dataset

Attributes included from OpenTox

#metadata, #uri

Instance Method Summary

• #initialize(subjectid = nil) ⇒ BBRC constructor

  Initialize bbrc algorithm.

Methods inherited from Fminer

#add_fminer_data, #check_params

Methods included from OpenTox::Algorithm

effect, gauss, get_cdk_descriptors, get_jl_descriptors, get_ob_descriptors, isnull_or_singular?, load_ds_csv, min_frequency, numeric?, pc_descriptors, #run, sum_size, #to_rdfxml, zero_variance?

Methods included from OpenTox

#add_metadata, all, #delete, #load_metadata, sign_in, text_to_html, #to_rdfxml

Constructor Details

#initialize(subjectid = nil) ⇒ BBRC

Initialize bbrc algorithm

# File 'lib/algorithm.rb', line 170

def initialize(subjectid=nil)
  super File.join(CONFIG[:services]["opentox-algorithm"], "fminer/bbrc")
  load_metadata(subjectid)
end