Method List
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#<< BELParser::Expression::Model::Term
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#<=> BELParser::Expression::Model::Parameter
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#<=> BELParser::Resource::Value
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#<=> BELParser::Resource::Dataset
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#<=> BELParser::Language::Signature
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#== BELParser::Resource::Value
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#== BELParser::Expression::Model::Parameter
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#== BELParser::Expression::Model::Annotation
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#== BELParser::Language::Relationship
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#== BELParser::Expression::Model::Statement
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#== BELParser::Resource::Dataset
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#== BELParser::Expression::Model::Term
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#== AST::Node
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#== BELParser::Expression::Model::Namespace
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#=== BELParser::Language::Function
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#=~ BELParser::Language::Relationship
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#=~ BELParser::Language::Function
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#[] BELParser::Expression::Model::Namespace
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#[] BELParser::Resource::LRUCache
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#[] BELParser::Expression::Model::Annotation
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#[]= BELParser::Resource::LRUCache
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#actual_type BELParser::Language::Semantics::SemanticsNotNilNodeWarning
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#actual_type BELParser::Language::Semantics::SemanticsTypeWarning
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#actual_type BELParser::Language::Semantics::SemanticsArgumentLengthWarning
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#add_loc_func BELParser::Language::Version1_0::Upgrades::TranslocationTransformation
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#add_molecular_activity BELParser::Language::Version1_0::Upgrades::ActivityTransformation
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#add_syntax_error BELParser::Parsers::AST::Node
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#amino_acid_of BELParser::Language::Semantics::Builder
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#amino_acids BELParser::Language::Semantics::SemanticAminoAcidOf
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annotation BELParser::Script::Syntax::UndefinedAnnotationValue
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#annotation_definition BELParser::Parsers::AST::Sexp
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#annotation_resource? BELParser::Resource::Dataset
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#any BELParser::Language::Semantics::Builder
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#append BELParser::Parsers::AST::Node
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#append AST::Node
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#argument BELParser::Parsers::AST::Sexp
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#argument BELParser::Language::Semantics::Builder
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#arguments BELParser::Expression::Model::Term
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#arguments BELParser::Parsers::AST::Term
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#arguments BELParser::Language::Semantics::SemanticTerm
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assert_is_a BELParser::Parsers::AST
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assert_reader BELParser::Resource::Reader
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#ast_to_namespace BELParser::Expression::Model::Converters
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#ast_to_parameter BELParser::Expression::Model::Converters
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#ast_to_statement BELParser::Expression::Model::Converters
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#ast_to_term BELParser::Expression::Model::Converters
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ast_type BELParser::Parsers::AST::Node
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#blank_line BELParser::Parsers::AST::Sexp
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build BELParser::Language::Semantics::Builder
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build BELParser::Parsers::AST::Sexp
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causal? BELParser::Language::Version2_0::Relationships::Increases
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causal? BELParser::Language::Version2_0::Relationships::CausesNoChange
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causal? BELParser::Language::Version1_0::Relationships::DirectlyIncreases
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causal? BELParser::Language::Version2_0::Relationships::DirectlyDecreases
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causal? BELParser::Language::Version2_0::Relationships::Decreases
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causal? BELParser::Language::Version1_0::Relationships::CausesNoChange
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causal? BELParser::Language::Version2_0::Relationships::Regulates
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causal? BELParser::Language::Version1_0::Relationships::Decreases
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causal? BELParser::Language::Version2_0::Relationships::DirectlyIncreases
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#causal? BELParser::Language::Relationship
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causal? BELParser::Language::Version1_0::Relationships::Increases
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causal? BELParser::Language::Version1_0::Relationships::DirectlyDecreases
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#causal_relationships BELParser::Language::Specification
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#character_range BELParser::Parsers::AST::Node
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#child BELParser::Parsers::AST::Object
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#child BELParser::Parsers::AST::Domain
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#child BELParser::Parsers::AST::Node
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#child BELParser::Parsers::AST::Argument
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#children AST::Node
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#children? BELParser::Parsers::AST::Node
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#citation BELParser::Script::NanopubMapper
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#clear BELParser::Resource::LRUCache
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#collapse BELParser::Language::TermTransformation
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#comment BELParser::Parsers::AST::Sexp
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#comment BELParser::Expression::Model::Statement
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#comment BELParser::Parsers::AST::Statement
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#comment? BELParser::Parsers::AST::Statement
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#comment_line BELParser::Parsers::AST::Sexp
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#complete BELParser::Completion::RelationshipCompleter
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#complete BELParser::Completion::ExactMatchParameterCompleter
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#complete BELParser::Completion::WildcardMatchParameterCompleter
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#complete BELParser::Completion::AllNamespacePrefixCompleter
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#complete BELParser::Completion::AllNamespacePrefixArgumentCompleter
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#complete BELParser::Completion::AllRelationshipCompleter
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#complete BELParser::Parsers::AST::Node
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#complete BELParser::Completion::AllFunctionCompleter
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#complete BELParser::Completion::FunctionCompleter
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#complete BELParser::Completion::BaseCompleter
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complete BELParser::Completion
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#complete BELParser::Completion::NamespacePrefixCompleter
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#complete? BELParser::Parsers::AST::Node
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complete_argument BELParser::Completion
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complete_function BELParser::Completion
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complete_parameter BELParser::Completion
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complete_relationship BELParser::Completion
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#concat AST::Node
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#concat BELParser::Parsers::AST::Node
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#consume BELParser::Script::StateFunction
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consume BELParser::Script::State::BELVersion
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consume BELParser::Script::State::DocumentProperty
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consume BELParser::Script::State::AnnotationDefinition
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consume BELParser::Script::State::NamespaceDefinition
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consume BELParser::Script::State::Unset
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consume BELParser::Script::State::Set
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#convert_argument BELParser::Expression::Model::Converters
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#convert_function BELParser::Expression::Model::Converters
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#convert_object BELParser::Expression::Model::Converters
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#convert_relationship BELParser::Expression::Model::Converters
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correlative? BELParser::Language::Version1_0::Relationships::PositiveCorrelation
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correlative? BELParser::Language::Version2_0::Relationships::PositiveCorrelation
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#correlative? BELParser::Language::Relationship
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correlative? BELParser::Language::Version2_0::Relationships::NegativeCorrelation
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correlative? BELParser::Language::Version1_0::Relationships::NegativeCorrelation
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#correlative_relationships BELParser::Language::Specification
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#count BELParser::Resource::LRUCache
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count_nested_statements BELParser::Language::Semantics::DeeplyNestedStatement
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#covalent_protein_modification_of BELParser::Language::Semantics::Builder
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#covalent_protein_modification_types BELParser::Language::Semantics::SemanticCovalentProteinModificationOf
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create_translator BEL::Translator::Plugins::BelScript
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#dataset BELParser::Resource::Value
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#dataset BELParser::Resource::Concept
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#dataset BELParser::Resource::FileResourceValue
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#dataset BELParser::Resource::JenaTDBReader::Concept
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#decreasing? BELParser::Language::Relationship
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decreasing? BELParser::Language::Version1_0::Relationships::DirectlyDecreases
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decreasing? BELParser::Language::Version2_0::Relationships::Decreases
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decreasing? BELParser::Language::Version1_0::Relationships::Decreases
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decreasing? BELParser::Language::Version1_0::Relationships::NegativeCorrelation
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decreasing? BELParser::Language::Version2_0::Relationships::DirectlyDecreases
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decreasing? BELParser::Language::Version2_0::Relationships::NegativeCorrelation
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#decreasing_relationships BELParser::Language::Specification
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default_specification BELParser::Language
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default_uri_reader BELParser::Resource
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default_uri_reader= BELParser::Resource
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default_url_reader BELParser::Resource
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default_url_reader= BELParser::Resource
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default_version BELParser::Language
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#defined_namespaces BELParser::Language::Syntax::UndefinedNamespaceError
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defines_version? BELParser::Language
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#delete BELParser::Resource::LRUCache
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#deprecated? BELParser::Language::Function
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deprecated? BELParser::Language::Version2_0::Relationships::PrognosticBiomarkerFor
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#deprecated? BELParser::Language::Relationship
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deprecated? BELParser::Language::Version2_0::Relationships::Analogous
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deprecated? BELParser::Language::Version2_0::Relationships::BiomarkerFor
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#deprecated_function BELParser::Language::Semantics::FunctionDeprecationWarning
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#deprecated_relationship BELParser::Language::Semantics::RelationshipDeprecationWarning
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#deprecated_relationships BELParser::Language::Specification
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description BELParser::Language::Version2_0::Relationships::HasMembers
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description BELParser::Language::Version1_0::Functions::Truncation
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description BELParser::Language::Version2_0::Functions::Activity
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description BELParser::Language::Version2_0::Relationships::Analogous
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description BELParser::Language::Version2_0::Functions::Reactants
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description BELParser::Language::Version1_0::Relationships::HasMember
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description BELParser::Language::Version1_0::Functions::KinaseActivity
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description BELParser::Language::Version1_0::Relationships::HasVariant
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description BELParser::Language::Version1_0::Relationships::ActsIn
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description BELParser::Language::Version2_0::Relationships::ActsIn
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description BELParser::Language::Version2_0::Functions::List
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description BELParser::Language::Version1_0::Relationships::Translocates
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description BELParser::Language::Version1_0::Functions::CellSurfaceExpression
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description BELParser::Language::Version2_0::Relationships::Regulates
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description BELParser::Language::Version1_0::Functions::List
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description BELParser::Language::Version1_0::Relationships::RateLimitingStepOf
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description BELParser::Language::Version2_0::Relationships::Includes
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description BELParser::Language::Version1_0::Relationships::IsA
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description BELParser::Language::Version1_0::Functions::TranscriptionalActivity
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description BELParser::Language::Version1_0::Relationships::CausesNoChange
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description BELParser::Language::Version1_0::Functions::Products
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description BELParser::Language::Version1_0::Functions::CellSecretion
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description BELParser::Language::Version2_0::Functions::CellSurfaceExpression
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description BELParser::Language::Version2_0::Functions::FromLocation
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description BELParser::Language::Version2_0::Relationships::IsA
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description BELParser::Language::Version2_0::Relationships::Decreases
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description BELParser::Language::Version1_0::Relationships::HasComponent
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description BELParser::Language::Version1_0::Functions::Fusion
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description BELParser::Language::Version1_0::Functions::PhosphataseActivity
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description BELParser::Language::Version2_0::Functions::Fusion
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description BELParser::Language::Version2_0::Functions::ComplexAbundance
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description BELParser::Language::Version1_0::Functions::MolecularActivity
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description BELParser::Language::Version1_0::Functions::TransportActivity
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description BELParser::Language::Version2_0::Relationships::PositiveCorrelation
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description BELParser::Language::Version2_0::Functions::Reaction
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#description BELParser::Language::Function
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description BELParser::Language::Version2_0::Functions::Fragment
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description BELParser::Language::Version2_0::Functions::Location
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description BELParser::Language::Version1_0::Functions::Degradation
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description BELParser::Language::Version2_0::Functions::CellSecretion
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description BELParser::Language::Version1_0::Functions::RNAAbundance
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description BELParser::Language::Version1_0::Functions::RibosylationActivity
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description BELParser::Language::Version2_0::Relationships::HasModification
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description BELParser::Language::Version1_0::Functions::Reaction
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description BELParser::Language::Version1_0::Relationships::Analogous
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#description BELParser::Language::Relationship
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description BELParser::Language::Version2_0::Relationships::HasVariant
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description BELParser::Language::Version2_0::Functions::ProteinModification
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description BELParser::Language::Version2_0::Functions::ToLocation
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description BELParser::Language::Version2_0::Functions::Abundance
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description BELParser::Language::Version1_0::Relationships::DirectlyIncreases
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description BELParser::Language::Version2_0::Functions::RNAAbundance
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description BELParser::Language::Version1_0::Functions::Reactants
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description BELParser::Language::Version2_0::Functions::MicroRNAAbundance
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description BELParser::Language::Version2_0::Functions::BiologicalProcess
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description BELParser::Language::Version1_0::Relationships::PrognosticBiomarkerFor
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description BELParser::Language::Version2_0::Functions::Pathology
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description BELParser::Language::Version2_0::Relationships::Orthologous
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description BELParser::Language::Version1_0::Relationships::HasComponents
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description BELParser::Language::Version2_0::Relationships::RateLimitingStepOf
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description BELParser::Language::Version2_0::Relationships::TranslatedTo
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description BELParser::Language::Version2_0::Functions::GeneAbundance
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description BELParser::Language::Version1_0::Functions::GeneAbundance
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description BELParser::Language::Version2_0::Relationships::HasMember
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description BELParser::Language::Version1_0::Functions::ProteinModification
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description BELParser::Language::Version1_0::Functions::CompositeAbundance
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description BELParser::Language::Version1_0::Relationships::BiomarkerFor
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description BELParser::Language::Version2_0::Relationships::HasComponents
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description BELParser::Language::Version1_0::Functions::BiologicalProcess
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description BELParser::Language::Version1_0::Relationships::HasProduct
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description BELParser::Language::Version1_0::Functions::Substitution
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description BELParser::Language::Version1_0::Functions::GTPBoundActivity
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description BELParser::Language::Version1_0::Relationships::SubProcessOf
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description BELParser::Language::Version2_0::Functions::Products
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description BELParser::Language::Version1_0::Relationships::TranslatedTo
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description BELParser::Language::Version1_0::Functions::MicroRNAAbundance
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description BELParser::Language::Version1_0::Relationships::Decreases
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description BELParser::Language::Version2_0::Relationships::BiomarkerFor
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description BELParser::Language::Version1_0::Functions::ProteinAbundance
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description BELParser::Language::Version2_0::Relationships::Increases
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description BELParser::Language::Version1_0::Relationships::DirectlyDecreases
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description BELParser::Language::Version2_0::Functions::Variant
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description BELParser::Language::Version1_0::Functions::ChaperoneActivity
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description BELParser::Language::Version1_0::Relationships::Increases
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description BELParser::Language::Version2_0::Relationships::TranscribedTo
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description BELParser::Language::Version1_0::Functions::PeptidaseActivity
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description BELParser::Language::Version1_0::Relationships::HasMembers
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description BELParser::Language::Version2_0::Functions::Degradation
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description BELParser::Language::Version1_0::Relationships::TranscribedTo
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description BELParser::Language::Version1_0::Relationships::Includes
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description BELParser::Language::Version2_0::Relationships::NegativeCorrelation
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description BELParser::Language::Version1_0::Relationships::ReactantIn
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description BELParser::Language::Version2_0::Relationships::CausesNoChange
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description BELParser::Language::Version1_0::Relationships::Association
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description BELParser::Language::Version1_0::Relationships::NegativeCorrelation
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description BELParser::Language::Version2_0::Relationships::PrognosticBiomarkerFor
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description BELParser::Language::Version1_0::Functions::ComplexAbundance
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description BELParser::Language::Version2_0::Relationships::ReactantIn
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description BELParser::Language::Version2_0::Functions::Translocation
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description BELParser::Language::Version2_0::Relationships::DirectlyIncreases
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description BELParser::Language::Version1_0::Functions::Pathology
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description BELParser::Language::Version2_0::Relationships::Association
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description BELParser::Language::Version2_0::Relationships::HasProduct
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description BELParser::Language::Version2_0::Functions::ProteinAbundance
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description BELParser::Language::Version2_0::Functions::CompositeAbundance
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description BELParser::Language::Version2_0::Functions::MolecularActivity
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description BELParser::Language::Version2_0::Relationships::SubProcessOf
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description BELParser::Language::Version2_0::Relationships::HasComponent
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description BELParser::Language::Version2_0::Relationships::DirectlyDecreases
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description BELParser::Language::Version1_0::Relationships::PositiveCorrelation
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description BELParser::Language::Version1_0::Relationships::Orthologous
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description BEL::Translator::Plugins::BelScript
-
description BELParser::Language::Version1_0::Functions::Abundance
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description BELParser::Language::Version1_0::Relationships::HasModification
-
description BELParser::Language::Version2_0::Relationships::Translocates
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description BELParser::Language::Version1_0::Functions::CatalyticActivity
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description BELParser::Language::Version1_0::Functions::Translocation
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#detail BELParser::Language::ExpressionValidator::Result
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#detail BELParser::Language::ExpressionValidator::NestedStatementResult
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#detail BELParser::Language::ExpressionValidator::TermResult
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#detail BELParser::Language::ExpressionValidator::ObservedTermResult
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#detail BELParser::Language::ExpressionValidator::SimpleStatementResult
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direct? BELParser::Language::Version2_0::Relationships::HasComponents
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direct? BELParser::Language::Version1_0::Relationships::DirectlyDecreases
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direct? BELParser::Language::Version1_0::Relationships::HasComponents
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direct? BELParser::Language::Version2_0::Relationships::DirectlyIncreases
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direct? BELParser::Language::Version1_0::Relationships::HasProduct
-
direct? BELParser::Language::Version2_0::Relationships::TranslatedTo
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direct? BELParser::Language::Version1_0::Relationships::DirectlyIncreases
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direct? BELParser::Language::Version2_0::Relationships::ReactantIn
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#direct? BELParser::Language::Relationship
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direct? BELParser::Language::Version2_0::Relationships::HasModification
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direct? BELParser::Language::Version2_0::Relationships::TranscribedTo
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direct? BELParser::Language::Version2_0::Relationships::DirectlyDecreases
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direct? BELParser::Language::Version1_0::Relationships::HasModification
-
direct? BELParser::Language::Version1_0::Relationships::TranslatedTo
-
direct? BELParser::Language::Version1_0::Relationships::HasComponent
-
direct? BELParser::Language::Version1_0::Relationships::ActsIn
-
direct? BELParser::Language::Version1_0::Relationships::TranscribedTo
-
direct? BELParser::Language::Version1_0::Relationships::HasVariant
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direct? BELParser::Language::Version1_0::Relationships::ReactantIn
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direct? BELParser::Language::Version2_0::Relationships::HasProduct
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direct? BELParser::Language::Version2_0::Relationships::HasComponent
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direct? BELParser::Language::Version2_0::Relationships::HasVariant
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direct? BELParser::Language::Version2_0::Relationships::ActsIn
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#direct_relationships BELParser::Language::Specification
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directed? BELParser::Language::Version2_0::Relationships::HasMember
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directed? BELParser::Language::Version2_0::Relationships::DirectlyIncreases
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directed? BELParser::Language::Version2_0::Relationships::DirectlyDecreases
-
directed? BELParser::Language::Version1_0::Relationships::HasMember
-
directed? BELParser::Language::Version1_0::Relationships::RateLimitingStepOf
-
directed? BELParser::Language::Version2_0::Relationships::HasProduct
-
directed? BELParser::Language::Version1_0::Relationships::TranslatedTo
-
directed? BELParser::Language::Version1_0::Relationships::HasVariant
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directed? BELParser::Language::Version2_0::Relationships::CausesNoChange
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directed? BELParser::Language::Version1_0::Relationships::BiomarkerFor
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directed? BELParser::Language::Version2_0::Relationships::ActsIn
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directed? BELParser::Language::Version1_0::Relationships::HasModification
-
directed? BELParser::Language::Version1_0::Relationships::CausesNoChange
-
directed? BELParser::Language::Version1_0::Relationships::HasComponent
-
directed? BELParser::Language::Version1_0::Relationships::ActsIn
-
directed? BELParser::Language::Version2_0::Relationships::PrognosticBiomarkerFor
-
directed? BELParser::Language::Version2_0::Relationships::SubProcessOf
-
directed? BELParser::Language::Version1_0::Relationships::HasMembers
-
directed? BELParser::Language::Version1_0::Relationships::ReactantIn
-
directed? BELParser::Language::Version2_0::Relationships::IsA
-
directed? BELParser::Language::Version2_0::Relationships::HasVariant
-
directed? BELParser::Language::Version2_0::Relationships::BiomarkerFor
-
directed? BELParser::Language::Version1_0::Relationships::TranscribedTo
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directed? BELParser::Language::Version2_0::Relationships::HasMembers
-
directed? BELParser::Language::Version1_0::Relationships::HasProduct
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#directed? BELParser::Language::Relationship
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directed? BELParser::Language::Version1_0::Relationships::Translocates
-
directed? BELParser::Language::Version2_0::Relationships::Increases
-
directed? BELParser::Language::Version2_0::Relationships::TranscribedTo
-
directed? BELParser::Language::Version2_0::Relationships::Includes
-
directed? BELParser::Language::Version2_0::Relationships::HasComponents
-
directed? BELParser::Language::Version1_0::Relationships::IsA
-
directed? BELParser::Language::Version2_0::Relationships::Regulates
-
directed? BELParser::Language::Version2_0::Relationships::ReactantIn
-
directed? BELParser::Language::Version2_0::Relationships::HasModification
-
directed? BELParser::Language::Version1_0::Relationships::PrognosticBiomarkerFor
-
directed? BELParser::Language::Version2_0::Relationships::Translocates
-
directed? BELParser::Language::Version2_0::Relationships::RateLimitingStepOf
-
directed? BELParser::Language::Version2_0::Relationships::HasComponent
-
directed? BELParser::Language::Version2_0::Relationships::TranslatedTo
-
directed? BELParser::Language::Version1_0::Relationships::DirectlyIncreases
-
directed? BELParser::Language::Version1_0::Relationships::HasComponents
-
directed? BELParser::Language::Version1_0::Relationships::Decreases
-
directed? BELParser::Language::Version1_0::Relationships::Increases
-
directed? BELParser::Language::Version1_0::Relationships::SubProcessOf
-
directed? BELParser::Language::Version1_0::Relationships::DirectlyDecreases
-
directed? BELParser::Language::Version1_0::Relationships::Includes
-
directed? BELParser::Language::Version2_0::Relationships::Decreases
-
#directed_relationships BELParser::Language::Specification
-
#dna_sub_conversion BELParser::Language::Version1_0::Upgrades::VariationTransformation
-
#dna_trunc_conversion BELParser::Language::Version1_0::Upgrades::VariationTransformation
-
#document_property BELParser::Parsers::AST::Sexp
-
#domain BELParser::Resource::FileResource
-
#domain BELParser::Resource::Dataset
-
#domain BELParser::Parsers::AST::Sexp
-
#domain BELParser::Resource::ConceptScheme
-
#domain BELParser::Expression::Model::Namespace
-
#domain BELParser::Parsers::AST::NamespaceDefinition
-
#domain BELParser::Resource::JenaTDBReader::ConceptScheme
-
#domain BELParser::Parsers::AST::AnnotationDefinition
-
#domain BELParser::Expression::Model::Annotation
-
#domain_equal? BELParser::Expression::Model::Namespace
-
#domain_equal? BELParser::Expression::Model::Annotation
-
#domain_value BELParser::Script::NanopubMapper
-
#dup AST::Node
-
#each BELParser::Parsers::BELScript::DefineAnnotation::Parser
-
#each BELParser::Parsers::BELScript::Set::Parser
-
#each BELParser::Script::Validator
-
#each BELParser::Expression::Filter
-
#each BELParser::Parsers::Expression::Comment::Parser
-
#each BELParser::Parsers::Expression::SimpleStatement::Parser
-
#each BELParser::Parsers::Expression::Term::Parser
-
#each BELParser::Parsers::Common::Function::Parser
-
#each BELParser::Script::NanopubMapper
-
#each BELParser::Parsers::BELScript::SetDocument::Parser
-
#each BELParser::Parsers::BELScript::Unset::Parser
-
#each BELParser::Script::StateAggregator
-
#each BELParser::Parsers::Common::MultiIdentifier::Parser
-
#each BELParser::Expression::Model::Namespace
-
#each BEL::Translator::Plugins::BelScript::Writer
-
#each BELParser::Parsers::Common::BlankLine::Parser
-
#each BELParser::Parsers::Expression::Relationship::Parser
-
#each BELParser::Parsers::Expression::ObservedTerm::Parser
-
#each BELParser::Script::Parser
-
#each BELParser::ASTGenerator
-
#each BELParser::Script::Filter
-
#each BELParser::Expression::Model::Annotation
-
#each BELParser::ASTFilter
-
#each BELParser::Parsers::Expression::Parameter::Parser
-
#each BELParser::Parsers::BELScript::DefineNamespace::Parser
-
#each NonblockingIOWrapper
-
#each BELParser::Resource::LRUCache
-
#each BELParser::Parsers::Common::List::Parser
-
#each BELParser::Parsers::Expression::NestedStatement::Parser
-
#each BELParser::Parsers::Common::CommentLine::Parser
-
#each BELParser::Script::FirstNode
-
#each BELParser::Parsers::Common::Identifier::Parser
-
#each BELParser::Parsers::Common::String::Parser
-
#each BEL::Translator::Plugins::BelScript::Reader
-
#each BELParser::Expression::Validator
-
#each BELParser::Parsers::Expression::StatementAutocomplete::Parser
-
#encoding BELParser::Parsers::AST::Value
-
#encoding BELParser::Expression::Model::Parameter
-
#encoding_of BELParser::Language::Semantics::Builder
-
#encodings BELParser::Resource::Concept
-
#encodings BELParser::Resource::Value
-
#encodings BELParser::Resource::JenaTDBReader::Concept
-
#encodings BELParser::Resource::FileResourceValue
-
#epilogue BEL::Translator::Plugins::BelScript::NanopubSerialization
-
#eql? AST::Node
-
#errors BELParser::Script::NanopubMapper
-
#expected_type BELParser::Language::Semantics::SemanticsNilNodeWarning
-
#expected_type BELParser::Language::Semantics::SemanticsArgumentLengthWarning
-
#expected_type BELParser::Language::Semantics::SemanticsTypeWarning
-
#experiment_context BELParser::Script::NanopubMapper
-
#expression_node BELParser::Language::Semantics::SemanticsResult
-
#expression_node BELParser::Language::Syntax::SyntaxResult
-
expression_validator BELParser::Script::Syntax::ExpressionValidation
-
#failure? BELParser::Language::Syntax::SyntaxWarning
-
#failure? BELParser::Language::Semantics::SemanticsResult
-
#failure? BELParser::Language::Semantics::SemanticMatch
-
#failure? BELParser::Language::Semantics::SemanticsWarning
-
#failure? BELParser::Language::Syntax::SyntaxResult
-
#failure? BELParser::Language::Syntax::SyntaxError
-
#fetch BELParser::Resource::LRUCache
-
file_extensions BEL::Translator::Plugins::BelScript
-
filter BELParser::Expression
-
#filter BELParser::ASTFilter
-
find_node BELParser::Completion
-
#first_child BELParser::Parsers::AST::Node
-
#fourth_child BELParser::Parsers::AST::Node
-
#freeze BELParser::Parsers::AST::Node
-
#freeze_categories BELParser::Language::Specification
-
#function BELParser::Language::Semantics::SemanticTerm
-
#function BELParser::Parsers::AST::Term
-
#function BELParser::Parsers::AST::Sexp
-
#function BELParser::Language::Specification
-
#function BELParser::Language::Semantics::Builder
-
#function BELParser::Expression::Model::Term
-
#function_of BELParser::Language::Semantics::Builder
-
#function_semantics BELParser::Parsers::AST::Term
-
#functions BELParser::Language::Semantics::SemanticFunctionOf
-
#functions BELParser::Language::Specification
-
#fusion_node? BELParser::Language::Version1_0::Upgrades::FusionTransformation
-
genomic? BELParser::Language::Version2_0::Relationships::TranscribedTo
-
genomic? BELParser::Language::Version1_0::Relationships::TranscribedTo
-
genomic? BELParser::Language::Version1_0::Relationships::TranslatedTo
-
genomic? BELParser::Language::Version2_0::Relationships::TranslatedTo
-
genomic? BELParser::Language::Version2_0::Relationships::Orthologous
-
genomic? BELParser::Language::Version1_0::Relationships::Orthologous
-
genomic? BELParser::Language::Version2_0::Relationships::Analogous
-
#genomic? BELParser::Language::Relationship
-
genomic? BELParser::Language::Version1_0::Relationships::Analogous
-
#genomic_relationships BELParser::Language::Specification
-
#getset BELParser::Resource::LRUCache
-
handle_citation BELParser::Script::State::Set
-
handle_support BELParser::Script::State::Set
-
#handler_missing AST::Processor::Mixin
-
#handler_missing BELParser::Completion::MergeCompletion
-
#has_encoding BELParser::Language::Semantics::Builder
-
#has_namespace BELParser::Language::Semantics::Builder
-
has_semantics BELParser::Parsers::AST::Node
-
#hash BELParser::Resource::Dataset
-
#hash BELParser::Expression::Model::Namespace
-
#hash AST::Node
-
#hash BELParser::Resource::Value
-
#hash BELParser::Expression::Model::Statement
-
#hash BELParser::Expression::Model::Annotation
-
#hash BELParser::Expression::Model::Parameter
-
#hash BELParser::Expression::Model::Term
-
id BEL::Translator::Plugins::BelScript
-
#identifier BELParser::Language::Semantics::Builder
-
#identifier BELParser::Script::Syntax::UnresolvableNamespaceError
-
#identifier BELParser::Resource::Dataset
-
#identifier BELParser::Resource::Concept
-
#identifier BELParser::Resource::JenaTDBReader::Concept
-
#identifier BELParser::Parsers::AST::Sexp
-
#identifier BELParser::Resource::FileResource
-
#identifier BELParser::Parsers::AST::Name
-
#identifier BELParser::Resource::ConceptScheme
-
#identifier BELParser::Parsers::AST::Prefix
-
#identifier BELParser::Parsers::AST::Keyword
-
#identifier BELParser::Parsers::AST::Function
-
#identifier BELParser::Resource::JenaTDBReader::ConceptScheme
-
#identifier BELParser::Resource::Value
-
#identifier_value? BELParser::Quoting
-
#include? BELParser::Expression::Model::Namespace
-
included BELParser::Resources
-
includes? BELParser::Language::AminoAcid
-
includes? BELParser::Language::CovalentProteinModification
-
#incomplete? BELParser::Parsers::AST::Node
-
#increasing? BELParser::Language::Relationship
-
increasing? BELParser::Language::Version1_0::Relationships::DirectlyIncreases
-
increasing? BELParser::Language::Version1_0::Relationships::Increases
-
increasing? BELParser::Language::Version2_0::Relationships::DirectlyIncreases
-
increasing? BELParser::Language::Version2_0::Relationships::RateLimitingStepOf
-
increasing? BELParser::Language::Version2_0::Relationships::PositiveCorrelation
-
increasing? BELParser::Language::Version1_0::Relationships::PositiveCorrelation
-
increasing? BELParser::Language::Version1_0::Relationships::RateLimitingStepOf
-
increasing? BELParser::Language::Version2_0::Relationships::Increases
-
#increasing_relationships BELParser::Language::Specification
-
#indirect? BELParser::Language::Relationship
-
#indirect_relationships BELParser::Language::Specification
-
inherited BELParser::Language::Version2_0::ReturnTypes::Any
-
inherited BELParser::Language::Version1_0::ValueEncodings::Any
-
inherited BELParser::Language::Version2_0::ValueEncodings::Any
-
inherited BELParser::Language::Version1_0::ReturnTypes::Any
-
#initialize BELParser::Language::Semantics::SemanticParameter
-
#initialize BELParser::Language::Semantics::SemanticStatement
-
#initialize BELParser::Language::Semantics::SignatureMappingWarning
-
#initialize BELParser::Language::Semantics::SemanticTerm
-
#initialize BELParser::Language::Semantics::SemanticFunction
-
#initialize BELParser::Language::Semantics::SignatureMappingSuccess
-
#initialize BELParser::Language::Semantics::SemanticASTNode
-
#initialize BELParser::Language::Semantics::SemanticArgument
-
#initialize BELParser::Language::Semantics::ListFunctionSubjectWarning
-
#initialize BELParser::Parsers::BELScript::DefineAnnotation::Parser
-
#initialize BELParser::Script::NanopubMapper
-
#initialize BELParser::Language::Semantics::RelationshipDeprecationWarning
-
#initialize BELParser::Expression::Model::Annotation
-
#initialize BELParser::Parsers::Common::String::Parser
-
#initialize BELParser::Language::Syntax::InvalidRelationshipSyntaxError
-
#initialize BELParser::Language::Syntax::SyntaxError
-
#initialize BELParser::Parsers::Common::CommentLine::Parser
-
#initialize BELParser::Language::Semantics::SemanticsArgumentLengthWarning
-
#initialize BELParser::Expression::Model::Term
-
#initialize BELParser::Expression::Validator
-
#initialize BELParser::Language::Semantics::MultipleSubjectObjectWarning
-
#initialize BELParser::Language::Semantics::SemanticsNotNilNodeWarning
-
#initialize BELParser::Language::Version1_0::Specification
-
#initialize BELParser::Language::Version2_0::Specification
-
#initialize BELParser::Parsers::Common::List::Parser
-
#initialize BELParser::Resource::LRUCache
-
#initialize BELParser::Language::Semantics::SemanticsNilNodeWarning
-
#initialize BELParser::Language::Semantics::SemanticsTypeWarning
-
#initialize BELParser::Language::ApplyNamespaceEncoding
-
#initialize BELParser::Parsers::Expression::StatementAutocomplete::Parser
-
#initialize BELParser::Parsers::Serializer
-
#initialize BELParser::Language::Semantics::SemanticsInvalidNamespaceWarning
-
#initialize BELParser::Script::FirstNode
-
#initialize BELParser::Script::Syntax::UnresolvableNamespaceError
-
#initialize BELParser::Resource::EagerSPARQLReader
-
#initialize BELParser::Expression::Model::Parameter
-
#initialize BELParser::Parsers::Common::MultiIdentifier::Parser
-
#initialize BELParser::Expression::Parser
-
#initialize BELParser::Language::Semantics::SemanticsInvalidEncodingWarning
-
#initialize BELParser::Expression::Filter
-
#initialize BELParser::Script::Validator
-
#initialize BELParser::Resource::Concept
-
#initialize BEL::Translator::Plugins::BelScript::Reader
-
#initialize BELParser::Language::Semantics::SemanticsMissingEncodingWarning
-
#initialize BELParser::Language::Semantics::SemanticsMissingNamespaceWarning
-
#initialize BELParser::Language::Semantics::SemanticsInvalidAminoAcidWarning
-
#initialize BELParser::Language::Semantics::SemanticsInvalidReturnTypeWarning
-
#initialize BELParser::Resource::ResourceURLReader
-
#initialize BELParser::Language::Semantics::SemanticsInvalidProteinModificationWarning
-
#initialize BELParser::Language::Semantics::SemanticsInvalidFunctionWarning
-
#initialize BELParser::Parsers::Expression::Comment::Parser
-
#initialize BELParser::Parsers::AST::Value
-
#initialize BELParser::Parsers::AST::Unset
-
#initialize BELParser::Parsers::AST::Term
-
#initialize BELParser::Parsers::AST::String
-
#initialize BELParser::Parsers::AST::Name
-
#initialize BELParser::Parsers::AST::Object
-
#initialize BELParser::Parsers::AST::Subject
-
#initialize BELParser::Parsers::AST::SimpleStatement
-
#initialize BELParser::Parsers::AST::ObservedTerm
-
#initialize BELParser::Parsers::AST::NestedStatement
-
#initialize BELParser::Parsers::AST::Statement
-
#initialize BELParser::Parsers::AST::DocumentProperty
-
#initialize BELParser::Parsers::AST::Set
-
#initialize BELParser::Language::ExpressionValidator::SimpleStatementResult
-
#initialize BELParser::Language::Semantics::DeeplyNestedStatementWarning
-
#initialize BELParser::Parsers::BELScript::SetDocument::Parser
-
#initialize BELParser::Parsers::AST::Relationship
-
#initialize BELParser::Parsers::AST::Parameter
-
#initialize BELParser::Parsers::AST::Prefix
-
#initialize BELParser::Parsers::AST::ListItem
-
#initialize BELParser::Parsers::AST::List
-
#initialize BELParser::Parsers::AST::Argument
-
#initialize BELParser::Language::Semantics::SemanticsInvalidSequencePositionWarning
-
#initialize BELParser::Parsers::AST::Pattern
-
#initialize BELParser::Parsers::AST::Uri
-
#initialize BELParser::Parsers::AST::Identifier
-
#initialize BELParser::Language::Semantics::SemanticsInvalidAminoAcidRangeWarning
-
#initialize BELParser::Parsers::AST::Url
-
#initialize BELParser::Parsers::AST::MultiIdentifier
-
#initialize BELParser::Parsers::AST::Domain
-
#initialize BELParser::Parsers::AST::NamespaceDefinition
-
#initialize BELParser::Parsers::AST::Function
-
#initialize BELParser::Parsers::AST::Keyword
-
#initialize BELParser::Parsers::AST::CommentLine
-
#initialize BELParser::Parsers::AST::BlankLine
-
#initialize BELParser::Parsers::AST::Comment
-
#initialize BELParser::Parsers::AST::AnnotationDefinition
-
#initialize BELParser::Language::Semantics::NonObjectListWarning
-
#initialize BELParser::Script::Syntax::UndefinedAnnotationValueWarning
-
#initialize BELParser::Parsers::AST::Node
-
#initialize AST::Node
-
#initialize BELParser::Parsers::Expression::Relationship::Parser
-
#initialize BELParser::Language::ApplyDefaultNamespace
-
#initialize BELParser::Language::Semantics::FunctionDeprecationWarning
-
#initialize BELParser::Completion::MergeCompletion
-
#initialize BELParser::ASTGenerator
-
#initialize BELParser::Script::Filter
-
#initialize BELParser::Script::Syntax::UnsupportedBELVersionWarning
-
#initialize BELParser::Parsers::Expression::ObservedTerm::Parser
-
#initialize BELParser::Completion::BaseCompleter
-
#initialize BELParser::Language::ExpressionValidator::ParameterResult
-
#initialize BELParser::ASTFilter
-
#initialize BELParser::Language::Syntax::InvalidFunctionSyntaxError
-
#initialize BELParser::Language::ExpressionValidator::ObservedTermResult
-
#initialize BELParser::Resource::ConceptScheme
-
#initialize BELParser::Parsers::Expression::Term::Parser
-
#initialize BELParser::Parsers::Common::Function::Parser
-
#initialize BELParser::Language::ExpressionValidator::TermResult
-
#initialize BELParser::Resource::SPARQLReader
-
#initialize BELParser::Resource::FileResource
-
#initialize BELParser::Language::Syntax::SyntaxWarning
-
#initialize BELParser::Parsers::BELScript::Set::Parser
-
#initialize BELParser::Language::Syntax::SyntaxResult
-
#initialize NonblockingIOWrapper
-
#initialize BELParser::Resource::FileResourceValue
-
#initialize BELParser::Language::Semantics::NonCausalNestedStatementWarning
-
#initialize BELParser::Script::Syntax::UndefinedAnnotationError
-
#initialize BELParser::Language::Semantics::SemanticIsSequencePosition
-
#initialize BELParser::Language::Semantics::SemanticIsAminoAcidRange
-
#initialize BELParser::Parsers::Expression::NestedStatement::Parser
-
#initialize BELParser::Language::ExpressionValidator::NestedStatementResult
-
#initialize BELParser::Parsers::Expression::Parameter::Parser
-
#initialize BELParser::Language::Semantics::SemanticCovalentProteinModificationOf
-
#initialize BELParser::Language::Semantics::SemanticAminoAcidOf
-
#initialize BELParser::Language::Semantics::SemanticReturnTypeOf
-
#initialize BELParser::Language::Semantics::SemanticEncodingOf
-
#initialize BELParser::Language::Semantics::SemanticFunctionOf
-
#initialize BELParser::Language::Semantics::SemanticsResult
-
#initialize BELParser::Language::ExpressionValidator
-
#initialize BELParser::Resource::JenaTDBReader::Concept
-
#initialize BELParser::Resource::JenaTDBReader::ConceptScheme
-
#initialize BELParser::Parsers::Common::BlankLine::Parser
-
#initialize BELParser::Parsers::BELScript::Unset::Parser
-
#initialize BELParser::Resource::JenaTDBReader
-
#initialize BELParser::Language::Semantics::SemanticMatch
-
#initialize BELParser::Expression::Model::Namespace
-
#initialize BEL::Translator::Plugins::BelScript::Writer
-
#initialize BELParser::Parsers::Common::Identifier::Parser
-
#initialize BELParser::Language::Syntax::UndefinedNamespaceValueWarning
-
#initialize BELParser::Parsers::Expression::SimpleStatement::Parser
-
#initialize BELParser::Language::Semantics::SemanticNamespaceOf
-
#initialize BELParser::Parsers::BELScript::DefineNamespace::Parser
-
#initialize BELParser::Language::Semantics::SemanticHasNamespace
-
#initialize BELParser::Language::Semantics::SemanticAny
-
#initialize BELParser::Script::Syntax::InvalidRegexPatternError
-
#initialize BELParser::Language::Syntax::UndefinedNamespaceError
-
#initialize BELParser::Language::Semantics::SemanticIsNil
-
#initialize BELParser::Language::Semantics::SemanticIdentifier
-
#initialize BELParser::Language::Semantics::SemanticValue
-
#initialize BELParser::Script::StateAggregator
-
#initialize BELParser::Language::Semantics::SemanticHasEncoding
-
#initialize BELParser::Language::Semantics::SemanticPrefix
-
#initialize BELParser::Language::Semantics::SemanticVariadicArguments
-
#initialize BELParser::Language::Semantics::NestedStatementWithoutObjectWarning
-
#initialize BELParser::Language::Semantics::SemanticsWarning
-
#initialize BELParser::Language::Semantics::RelationshipNotMultipleWarning
-
#initialize BELParser::Expression::Model::Statement
-
#initialize_copy BELParser::Expression::Model::Namespace
-
#initialize_copy BELParser::Expression::Model::Annotation
-
injected? BELParser::Language::Version2_0::Relationships::ActsIn
-
#injected? BELParser::Language::Relationship
-
injected? BELParser::Language::Version1_0::Relationships::Translocates
-
injected? BELParser::Language::Version2_0::Relationships::ReactantIn
-
injected? BELParser::Language::Version1_0::Relationships::Includes
-
injected? BELParser::Language::Version2_0::Relationships::HasProduct
-
injected? BELParser::Language::Version2_0::Relationships::Includes
-
injected? BELParser::Language::Version2_0::Relationships::HasVariant
-
injected? BELParser::Language::Version1_0::Relationships::ReactantIn
-
injected? BELParser::Language::Version1_0::Relationships::HasModification
-
injected? BELParser::Language::Version2_0::Relationships::Translocates
-
injected? BELParser::Language::Version1_0::Relationships::HasProduct
-
injected? BELParser::Language::Version1_0::Relationships::HasVariant
-
injected? BELParser::Language::Version2_0::Relationships::HasModification
-
injected? BELParser::Language::Version1_0::Relationships::ActsIn
-
#input_node BELParser::Language::Semantics::SemanticMatch
-
#inspect AST::Node
-
#inspect BELParser::Language::Specification
-
#invalid? BELParser::Expression::Model::Term
-
#invalid? BELParser::Expression::Model::Parameter
-
#invalid_function BELParser::Language::Syntax::InvalidFunctionSyntaxError
-
#invalid_object_signatures BELParser::Language::ExpressionValidator::SimpleStatementResult
-
#invalid_object_signatures BELParser::Language::ExpressionValidator::NestedStatementResult
-
#invalid_prefix BELParser::Language::Syntax::UndefinedNamespaceError
-
#invalid_signature_mappings BELParser::Language::ExpressionValidator::Result
-
#invalid_signature_mappings BELParser::Language::ExpressionValidator::ParameterResult
-
#invalid_subject_signatures BELParser::Language::ExpressionValidator::NestedStatementResult
-
#invalid_subject_signatures BELParser::Language::ExpressionValidator::SimpleStatementResult
-
#is_amino_acid_range_pattern BELParser::Language::Semantics::Builder
-
#is_bel_version? BELParser::Script::Keyword
-
#is_citation? BELParser::Script::Keyword
-
#is_implicit_annotation? BELParser::Script::Keyword
-
#is_nil BELParser::Language::Semantics::Builder
-
#is_sequence_position BELParser::Language::Semantics::Builder
-
#is_support? BELParser::Script::Keyword
-
#key? BELParser::Resource::LRUCache
-
#keyword BELParser::Resource::Dataset
-
#keyword BELParser::Parsers::AST::Sexp
-
#keyword BELParser::Parsers::AST::NamespaceDefinition
-
#keyword BELParser::Parsers::AST::AnnotationDefinition
-
#keyword BELParser::Expression::Model::Annotation
-
#keyword BELParser::Expression::Model::Namespace
-
#keyword BELParser::Resource::JenaTDBReader::ConceptScheme
-
#keyword BELParser::Resource::ConceptScheme
-
#keyword BELParser::Resource::FileResource
-
latest_supported_specification BELParser::Language
-
latest_supported_version BELParser::Language
-
#line_number BELParser::Parsers::AST::Node
-
#list BELParser::Parsers::AST::Sexp
-
#list? BELParser::Parsers::AST::Domain
-
#list_item BELParser::Parsers::AST::Sexp
-
#list_items BELParser::Parsers::AST::List
-
#listable? BELParser::Language::Relationship
-
listable? BELParser::Language::Version2_0::Relationships::HasComponents
-
listable? BELParser::Language::Version1_0::Relationships::HasMembers
-
listable? BELParser::Language::Version2_0::Relationships::HasMembers
-
listable? BELParser::Language::Version1_0::Relationships::HasComponents
-
#listable_relationships BELParser::Language::Specification
-
#load_threads BELParser::Resource::EagerReader
-
#load_values BELParser::Resource::EagerReader
-
load_version_path BELParser::Language::BaseSpecification
-
#locks BELParser::Resource::EagerReader
-
long BELParser::Language::Version1_0::Relationships::HasVariant
-
long BELParser::Language::Version2_0::Relationships::Translocates
-
long BELParser::Language::Version2_0::Functions::BiologicalProcess
-
long BELParser::Language::Version2_0::Functions::RNAAbundance
-
long BELParser::Language::Version2_0::Functions::CompositeAbundance
-
long BELParser::Language::Version1_0::Functions::MolecularActivity
-
long BELParser::Language::Version1_0::Functions::CellSecretion
-
long BELParser::Language::Version2_0::Relationships::HasComponent
-
long BELParser::Language::Version2_0::Functions::GeneAbundance
-
long BELParser::Language::Version2_0::Relationships::IsA
-
long BELParser::Language::Version2_0::Functions::Fragment
-
long BELParser::Language::Version1_0::Relationships::RateLimitingStepOf
-
long BELParser::Language::Version2_0::Relationships::Regulates
-
long BELParser::Language::Version2_0::Functions::FromLocation
-
long BELParser::Language::Version1_0::Relationships::DirectlyIncreases
-
long BELParser::Language::Version2_0::Relationships::NegativeCorrelation
-
long BELParser::Language::Version2_0::Functions::Pathology
-
long BELParser::Language::Version1_0::Relationships::HasMember
-
long BELParser::Language::Version1_0::Functions::MicroRNAAbundance
-
long BELParser::Language::Version2_0::Relationships::RateLimitingStepOf
-
long BELParser::Language::Version2_0::Relationships::ActsIn
-
long BELParser::Language::Version2_0::Relationships::PrognosticBiomarkerFor
-
long BELParser::Language::Version2_0::Functions::ComplexAbundance
-
long BELParser::Language::Version2_0::Functions::MicroRNAAbundance
-
long BELParser::Language::Version2_0::Relationships::Analogous
-
long BELParser::Language::Version2_0::Functions::Translocation
-
long BELParser::Language::Version2_0::Functions::Reaction
-
long BELParser::Language::Version1_0::Relationships::Includes
-
long BELParser::Language::Version1_0::Relationships::PositiveCorrelation
-
long BELParser::Language::Version1_0::Relationships::Association
-
long BELParser::Language::Version2_0::Functions::Products
-
long BELParser::Language::Version1_0::Functions::ChaperoneActivity
-
long BELParser::Language::Version1_0::Functions::GeneAbundance
-
long BELParser::Language::Version1_0::Functions::Abundance
-
long BELParser::Language::Version2_0::Relationships::HasMember
-
long BELParser::Language::Version1_0::Functions::Truncation
-
long BELParser::Language::Version2_0::Relationships::Increases
-
long BELParser::Language::Version1_0::Functions::GTPBoundActivity
-
long BELParser::Language::Version2_0::Relationships::Orthologous
-
long BELParser::Language::Version2_0::Functions::CellSecretion
-
long BELParser::Language::Version1_0::Relationships::Increases
-
long BELParser::Language::Version2_0::Relationships::HasProduct
-
long BELParser::Language::Version2_0::Relationships::HasModification
-
long BELParser::Language::Version1_0::Relationships::SubProcessOf
-
long BELParser::Language::Version1_0::Relationships::TranscribedTo
-
long BELParser::Language::Version2_0::Functions::Reactants
-
long BELParser::Language::Version1_0::Functions::List
-
long BELParser::Language::Version1_0::Relationships::Translocates
-
long BELParser::Language::Version1_0::Functions::Fusion
-
long BELParser::Language::Version1_0::Relationships::TranslatedTo
-
long BELParser::Language::Version1_0::Relationships::Orthologous
-
long BELParser::Language::Version1_0::Relationships::HasComponents
-
long BELParser::Language::Version1_0::Functions::PhosphataseActivity
-
long BELParser::Language::Version2_0::Functions::ToLocation
-
long BELParser::Language::Version1_0::Functions::ProteinAbundance
-
#long BELParser::Language::Relationship
-
long BELParser::Language::Version2_0::Relationships::SubProcessOf
-
long BELParser::Language::Version2_0::Relationships::Decreases
-
long BELParser::Language::Version1_0::Functions::BiologicalProcess
-
long BELParser::Language::Version1_0::Relationships::Decreases
-
long BELParser::Language::Version1_0::Functions::CatalyticActivity
-
long BELParser::Language::Version1_0::Relationships::IsA
-
long BELParser::Language::Version1_0::Functions::KinaseActivity
-
long BELParser::Language::Version2_0::Functions::Degradation
-
long BELParser::Language::Version1_0::Relationships::HasProduct
-
long BELParser::Language::Version1_0::Relationships::ReactantIn
-
long BELParser::Language::Version2_0::Functions::ProteinAbundance
-
long BELParser::Language::Version1_0::Functions::RNAAbundance
-
long BELParser::Language::Version1_0::Relationships::CausesNoChange
-
#long BELParser::Language::Function
-
long BELParser::Language::Version2_0::Relationships::TranslatedTo
-
long BELParser::Language::Version1_0::Functions::ComplexAbundance
-
long BELParser::Language::Version2_0::Relationships::BiomarkerFor
-
long BELParser::Language::Version1_0::Relationships::BiomarkerFor
-
long BELParser::Language::Version2_0::Relationships::HasVariant
-
long BELParser::Language::Version1_0::Functions::PeptidaseActivity
-
long BELParser::Language::Version1_0::Functions::Reactants
-
long BELParser::Language::Version2_0::Relationships::HasComponents
-
long BELParser::Language::Version1_0::Relationships::ActsIn
-
long BELParser::Language::Version1_0::Functions::Substitution
-
long BELParser::Language::Version2_0::Functions::Location
-
long BELParser::Language::Version2_0::Relationships::Association
-
long BELParser::Language::Version1_0::Relationships::HasComponent
-
long BELParser::Language::Version1_0::Relationships::HasMembers
-
long BELParser::Language::Version2_0::Relationships::TranscribedTo
-
long BELParser::Language::Version2_0::Functions::Abundance
-
long BELParser::Language::Version2_0::Functions::Variant
-
long BELParser::Language::Version1_0::Functions::CellSurfaceExpression
-
long BELParser::Language::Version1_0::Functions::TranscriptionalActivity
-
long BELParser::Language::Version2_0::Relationships::ReactantIn
-
long BELParser::Language::Version1_0::Functions::CompositeAbundance
-
long BELParser::Language::Version2_0::Relationships::DirectlyDecreases
-
long BELParser::Language::Version1_0::Relationships::NegativeCorrelation
-
long BELParser::Language::Version1_0::Functions::RibosylationActivity
-
long BELParser::Language::Version2_0::Functions::Fusion
-
long BELParser::Language::Version1_0::Functions::ProteinModification
-
long BELParser::Language::Version1_0::Functions::Translocation
-
long BELParser::Language::Version1_0::Functions::Reaction
-
long BELParser::Language::Version2_0::Functions::MolecularActivity
-
long BELParser::Language::Version1_0::Relationships::DirectlyDecreases
-
long BELParser::Language::Version2_0::Functions::List
-
long BELParser::Language::Version2_0::Relationships::DirectlyIncreases
-
long BELParser::Language::Version2_0::Relationships::PositiveCorrelation
-
long BELParser::Language::Version1_0::Functions::Degradation
-
long BELParser::Language::Version2_0::Relationships::Includes
-
long BELParser::Language::Version1_0::Functions::TransportActivity
-
long BELParser::Language::Version1_0::Relationships::Analogous
-
long BELParser::Language::Version2_0::Functions::Activity
-
long BELParser::Language::Version1_0::Functions::Products
-
long BELParser::Language::Version1_0::Relationships::HasModification
-
long BELParser::Language::Version2_0::Relationships::CausesNoChange
-
long BELParser::Language::Version2_0::Functions::ProteinModification
-
long BELParser::Language::Version2_0::Functions::CellSurfaceExpression
-
long BELParser::Language::Version1_0::Functions::Pathology
-
long BELParser::Language::Version1_0::Relationships::PrognosticBiomarkerFor
-
long BELParser::Language::Version2_0::Relationships::HasMembers
-
#make_completion BELParser::Completion::RelationshipCompleter
-
#make_completion BELParser::Completion::NamespacePrefixArgumentCompleter
-
#make_completion BELParser::Completion::FunctionTermCompleter
-
#make_completion BELParser::Completion::FunctionArgumentCompleter
-
#make_completion BELParser::Completion::AllFunctionTermCompleter
-
#make_completion BELParser::Completion::AllFunctionArgumentCompleter
-
map BELParser::Language::Semantics::SemanticsFunction
-
map BELParser::Language::Syntax::UndefinedNamespaceValue
-
map BELParser::Language::Semantics::DeeplyNestedStatement
-
map BELParser::Language::Semantics::RelationshipNotListable
-
map BELParser::Language::Syntax::SyntaxFunction
-
map BELParser::Language::Semantics::RelationshipDeprecation
-
map BELParser::Script::Syntax::UndefinedAnnotationValue
-
map BELParser::Language::Semantics::NonCausalNestedStatement
-
map BELParser::Language::Semantics::MultipleSubjectObject
-
map BELParser::Language::Semantics::ListFunctionSubject
-
map BELParser::Script::Syntax::UndefinedAnnotation
-
map BELParser::Language::Semantics::SignatureMapping
-
map BELParser::Language::Syntax::UndefinedNamespace
-
map BELParser::Script::Syntax::ExpressionValidation
-
map BELParser::Script::Syntax::InvalidRegexPattern
-
map BELParser::Script::Syntax::UnresolvableNamespace
-
map BELParser::Script::Syntax::UnsupportedBELVersion
-
map BELParser::Language::Semantics::FunctionDeprecation
-
map BELParser::Language::Semantics::NestedStatementWithoutObject
-
map BELParser::Language::Syntax::InvalidRelationship
-
map BELParser::Language::Semantics::NonObjectList
-
map BELParser::Language::Syntax::InvalidFunction
-
map_comment_line LINE
-
map_empty_line LINE
-
#map_lines BELParser::LineMapping
-
map_object BELParser::Language::Semantics::NonObjectList
-
map_statement BELParser::Language::Semantics::RelationshipNotListable
-
map_subject_object BELParser::Language::Semantics::MultipleSubjectObject
-
map_value BELParser::Script::Syntax::UndefinedAnnotationValue
-
#map_value BELParser::Completion::QuotedValue
-
#match BELParser::Language::Semantics::SemanticIsSequencePosition
-
#match BELParser::Language::Semantics::SemanticIsAminoAcidRange
-
#match BELParser::Language::Semantics::SemanticCovalentProteinModificationOf
-
#match BELParser::Language::Semantics::SemanticReturnTypeOf
-
#match BELParser::Language::Semantics::SemanticFunctionOf
-
#match BELParser::Language::Semantics::SemanticEncodingOf
-
#match BELParser::Language::Semantics::SemanticHasEncoding
-
#match BELParser::Language::Semantics::SemanticHasNamespace
-
#match BELParser::Language::Semantics::SemanticAminoAcidOf
-
#match BELParser::Language::Semantics::SemanticAny
-
#match BELParser::Language::Semantics::SemanticIdentifier
-
#match BELParser::Language::Semantics::SemanticNamespaceOf
-
#match BELParser::Language::Semantics::SemanticIsNil
-
#match BELParser::Language::Semantics::SemanticValue
-
#match BELParser::Language::Semantics::SemanticPrefix
-
#match BELParser::Language::Semantics::SemanticVariadicArguments
-
#match BELParser::Language::Semantics::SemanticStatement
-
#match BELParser::Language::Semantics::SemanticTerm
-
#match BELParser::Language::Semantics::SemanticParameter
-
#match BELParser::Language::Semantics::SemanticArgument
-
#match BELParser::Language::Semantics::SemanticFunction
-
match BELParser::Language::Semantics
-
match_comment_line LINE
-
match_empty_line LINE
-
#match_encoding BELParser::Language::Semantics::SemanticEncodingOf
-
#max_size= BELParser::Resource::LRUCache
-
media_types BEL::Translator::Plugins::BelScript
-
#msg BELParser::Language::Semantics::SemanticsResult
-
#msg BELParser::Language::Syntax::SyntaxResult
-
#msg BELParser::Script::Syntax::UnresolvableNamespaceError
-
#msg BELParser::Language::Syntax::SyntaxError
-
#msg BELParser::Script::Syntax::UnsupportedBELVersionWarning
-
#msg BELParser::Language::Semantics::Valid
-
#msg BELParser::Language::Syntax::UndefinedNamespaceValueWarning
-
#msg BELParser::Language::Syntax::InvalidFunctionSyntaxError
-
#msg BELParser::Script::Syntax::UndefinedAnnotationError
-
#msg BELParser::Language::Syntax::UndefinedNamespaceError
-
#msg BELParser::Language::Syntax::InvalidRelationshipSyntaxError
-
#msg BELParser::Language::Syntax::Valid
-
#msg BELParser::Script::Syntax::InvalidRegexPatternError
-
#msg BELParser::Script::Syntax::UndefinedAnnotationValueWarning
-
#multi_identifier BELParser::Parsers::AST::Sexp
-
#name BELParser::Resource::FileResourceValue
-
#name BELParser::Resource::JenaTDBReader::Concept
-
#name BELParser::Resource::JenaTDBReader::ConceptScheme
-
#name BELParser::Resource::ConceptScheme
-
#name BELParser::Resource::FileResource
-
name BEL::Translator::Plugins::BelScript
-
#name BELParser::Resource::Concept
-
#name BELParser::Parsers::AST::Sexp
-
#name BELParser::Parsers::AST::Unset
-
#name BELParser::Parsers::AST::DocumentProperty
-
#name BELParser::Parsers::AST::Set
-
#name BELParser::Resource::Value
-
names BELParser::Language::CovalentProteinModification
-
names BELParser::Language::AminoAcid
-
#namespace BELParser::Expression::Model::Parameter
-
#namespace BELParser::Parsers::AST::Value
-
#namespace BELParser::Parsers::AST::Prefix
-
#namespace_definition BELParser::Parsers::AST::Sexp
-
#namespace_of BELParser::Language::Semantics::Builder
-
#namespace_resource? BELParser::Resource::Dataset
-
#namespace_value BELParser::Parsers::AST::Value
-
#namespaces BELParser::Expression::Model::Statement
-
#namespaces BELParser::Language::Semantics::SemanticNamespaceOf
-
#namespaces BELParser::Expression::Model::Term
-
#nanopub BELParser::Script::NanopubMapper
-
#nested? BELParser::Expression::Model::Statement
-
#nested_number BELParser::Language::Semantics::DeeplyNestedStatementWarning
-
#nested_statement BELParser::Parsers::AST::Sexp
-
#nested_threshold BELParser::Language::Semantics::DeeplyNestedStatementWarning
-
#non_causal_relationship BELParser::Language::Semantics::NestedStatementWithoutObjectWarning
-
#non_causal_relationship BELParser::Language::Semantics::NonCausalNestedStatementWarning
-
#normalize_line_terminator BELParser::LineMapping
-
#num_children BELParser::Parsers::AST::Node
-
#object BELParser::Expression::Model::Statement
-
#object BELParser::Parsers::AST::Sexp
-
#object BELParser::Parsers::AST::Statement
-
#object? BELParser::Parsers::AST::Statement
-
#object_valid? BELParser::Language::ExpressionValidator::NestedStatementResult
-
#object_valid? BELParser::Language::ExpressionValidator::SimpleStatementResult
-
#observed_term BELParser::Parsers::AST::Sexp
-
#on_annotation_definition BELParser::Script::ApplyResourceURI
-
#on_annotation_definition BELParser::Parsers::Serializer
-
#on_argument BELParser::Language::TermTransformation
-
#on_argument BELParser::Parsers::Serializer
-
#on_argument BELParser::Language::ApplyNamespaceEncoding
-
#on_argument BELParser::Language::ApplyDefaultNamespace
-
#on_blank_line BELParser::Parsers::Serializer
-
#on_comment_line BELParser::Parsers::Serializer
-
#on_document_property BELParser::Parsers::Serializer
-
#on_domain BELParser::Parsers::Serializer
-
#on_function BELParser::Language::TermTransformation
-
#on_function BELParser::Language::Version1_0::Upgrades::ActivityTransformation
-
#on_function BELParser::Parsers::Serializer
-
#on_identifier BELParser::Parsers::Serializer
-
#on_keyword BELParser::Parsers::Serializer
-
#on_list BELParser::Parsers::Serializer
-
#on_list_item BELParser::Parsers::Serializer
-
#on_name BELParser::Parsers::Serializer
-
#on_namespace_definition BELParser::Script::ApplyResourceURI
-
#on_namespace_definition BELParser::Parsers::Serializer
-
#on_nested_statement BELParser::Language::TermTransformation
-
#on_nested_statement BELParser::Parsers::Serializer
-
#on_nested_statement BELParser::Language::ApplyNamespaceEncoding
-
#on_object BELParser::Language::TermTransformation
-
#on_object BELParser::Parsers::Serializer
-
#on_object BELParser::Language::ApplyNamespaceEncoding
-
#on_observed_term BELParser::Language::TermTransformation
-
#on_observed_term BELParser::Parsers::Serializer
-
#on_observed_term BELParser::Language::ApplyNamespaceEncoding
-
#on_parameter BELParser::Parsers::Serializer
-
#on_parameter BELParser::Language::ApplyNamespaceEncoding
-
#on_parameter BELParser::Language::ApplyDefaultNamespace
-
#on_pattern BELParser::Parsers::Serializer
-
#on_prefix BELParser::Parsers::Serializer
-
#on_prefix BELParser::Language::ApplyNamespaceEncoding
-
#on_prefix BELParser::Language::ApplyDefaultNamespace
-
#on_relationship BELParser::Parsers::Serializer
-
#on_set BELParser::Parsers::Serializer
-
#on_simple_statement BELParser::Language::TermTransformation
-
#on_simple_statement BELParser::Parsers::Serializer
-
#on_simple_statement BELParser::Language::ApplyNamespaceEncoding
-
#on_statement BELParser::Language::TermTransformation
-
#on_statement BELParser::Parsers::Serializer
-
#on_statement BELParser::Language::ApplyNamespaceEncoding
-
#on_string BELParser::Parsers::Serializer
-
#on_subject BELParser::Language::TermTransformation
-
#on_subject BELParser::Parsers::Serializer
-
#on_subject BELParser::Language::ApplyNamespaceEncoding
-
#on_term BELParser::Language::Version1_0::Upgrades::FusionTransformation
-
#on_term BELParser::Language::TermTransformation
-
#on_term BELParser::Language::Version1_0::Upgrades::TranslocationTransformation
-
#on_term BELParser::Parsers::Serializer
-
#on_term BELParser::Language::Version1_0::Upgrades::VariationTransformation
-
#on_term BELParser::Language::Version1_0::Upgrades::ActivityTransformation
-
#on_term BELParser::Language::ApplyNamespaceEncoding
-
#on_term BELParser::Language::ApplyDefaultNamespace
-
#on_term BELParser::Language::Version1_0::Upgrades::ProteinModificationTransformation
-
#on_unset BELParser::Parsers::Serializer
-
#on_url BELParser::Parsers::Serializer
-
#on_value BELParser::Language::ApplyNamespaceEncoding
-
#on_value BELParser::Parsers::Serializer
-
#ord_to_str BELParser::Parsers::Buffer
-
#parameter BELParser::Language::Semantics::Builder
-
#parameter BELParser::Parsers::AST::Sexp
-
#parameter? BELParser::Parsers::AST::Argument
-
parameter_filter BELParser::Expression
-
parse BELParser::Parsers::Expression::Parameter
-
parse BELParser::Parsers::Common::CommentLine
-
parse BELParser::Parsers::Expression::Comment
-
parse BELParser::Parsers::Common::Identifier
-
parse BELParser::Parsers::Common::BlankLine
-
parse BELParser::Parsers::BELScript::Unset
-
parse BELParser::Parsers::Expression::Term
-
parse BELParser::Parsers::Common::Function
-
parse BELParser::Parsers::BELScript::Set
-
parse BELParser::Parsers::Expression::StatementAutocomplete
-
parse BELParser::Parsers::Common::String
-
parse LINE
-
parse BELParser::Parsers::Common::List
-
#parse BELParser::Expression::Parser
-
parse BELParser::Expression
-
parse BELParser::Parsers::BELScript::DefineAnnotation
-
parse BELParser::Parsers::Expression::NestedStatement
-
parse BELParser::Parsers::BELScript::DefineNamespace
-
parse BELParser::Parsers::Expression::SimpleStatement
-
parse BELParser::Parsers::Expression::ObservedTerm
-
parse BELParser::Parsers::Expression::Relationship
-
parse BELParser::Parsers::BELScript::SetDocument
-
parse BELParser::Parsers::Common::MultiIdentifier
-
parse_parameters BELParser::Expression
-
parse_statements BELParser::Expression
-
parse_terms BELParser::Expression
-
#pattern BELParser::Parsers::AST::Sexp
-
#pattern BELParser::Script::Syntax::InvalidRegexPatternError
-
#pattern? BELParser::Parsers::AST::Domain
-
#prefix BELParser::Language::Semantics::Builder
-
#prefix BELParser::Parsers::AST::Sexp
-
#prefix BELParser::Parsers::AST::Value
-
#prefix BELParser::Parsers::AST::Parameter
-
#prefix BELParser::Script::Syntax::UnresolvableNamespaceError
-
#prefix BELParser::Script::Syntax::UndefinedAnnotationValueWarning
-
#prefix BELParser::Script::Syntax::UndefinedAnnotationError
-
#prefix_patterns BELParser::Language::Semantics::SemanticPrefix
-
#process AST::Processor::Mixin
-
#process_all AST::Processor::Mixin
-
#protein_sub_conversion BELParser::Language::Version1_0::Upgrades::VariationTransformation
-
#protein_trunc_conversion BELParser::Language::Version1_0::Upgrades::VariationTransformation
-
#quote BELParser::Quoting
-
#quote_if_needed BELParser::Quoting
-
#quoted? BELParser::Quoting
-
raise_not_implemented BELParser::Language::Version2_0::ValueEncodings::Any
-
raise_not_implemented BELParser::Language::Version2_0::ReturnTypes::Any
-
raise_not_implemented BELParser::Language::Version1_0::ReturnTypes::Any
-
raise_not_implemented BELParser::Language::Version1_0::ValueEncodings::Any
-
#range_end BELParser::Parsers::AST::Node
-
#range_start BELParser::Parsers::AST::Node
-
#read BEL::Translator::Plugins::BelScript::BelScriptTranslator
-
#references BELParser::Script::NanopubMapper
-
#relationship BELParser::Expression::Model::Statement
-
#relationship BELParser::Language::Specification
-
#relationship BELParser::Parsers::AST::Sexp
-
#relationship BELParser::Parsers::AST::Statement
-
#relationship BELParser::Language::Syntax::InvalidRelationshipSyntaxError
-
#relationship? BELParser::Parsers::AST::Statement
-
#relationships BELParser::Language::Specification
-
#report BELParser::Script::NanopubMapper
-
require_script_path BELParser::Script::StateAggregator
-
require_script_path BELParser::Script::Validator
-
resolve_uri BELParser::Resource
-
#resources BELParser::Resource::EagerReader
-
#results BELParser::Language::Semantics::SignatureMappingSuccess
-
#results BELParser::Language::Semantics::SignatureMappingWarning
-
#retrieve_resource BELParser::Resource::ResourceURLReader
-
#retrieve_resource BELParser::Resource::EagerSPARQLReader
-
#retrieve_resource BELParser::Resource::JenaTDBReader
-
#retrieve_resource BELParser::Resource::SPARQLReader
-
#retrieve_resource BELParser::Resource::EagerReader
-
#retrieve_resource BELParser::Resource::LRUReader
-
#retrieve_resource BELParser::Resource::Reader
-
#retrieve_value_from_resource BELParser::Resource::ResourceURLReader
-
#retrieve_value_from_resource BELParser::Resource::EagerSPARQLReader
-
#retrieve_value_from_resource BELParser::Resource::JenaTDBReader
-
#retrieve_value_from_resource BELParser::Resource::SPARQLReader
-
#retrieve_value_from_resource BELParser::Resource::EagerReader
-
#retrieve_value_from_resource BELParser::Resource::LRUReader
-
#retrieve_value_from_resource BELParser::Resource::Reader
-
#retrieve_values_from_resource BELParser::Resource::EagerSPARQLReader
-
#retrieve_values_from_resource BELParser::Resource::ResourceURLReader
-
#retrieve_values_from_resource BELParser::Resource::JenaTDBReader
-
#retrieve_values_from_resource BELParser::Resource::SPARQLReader
-
#retrieve_values_from_resource BELParser::Resource::EagerReader
-
#retrieve_values_from_resource BELParser::Resource::LRUReader
-
#retrieve_values_from_resource BELParser::Resource::Reader
-
return_type BELParser::Language::Version2_0::Functions::MicroRNAAbundance
-
return_type BELParser::Language::Version2_0::Functions::ProteinModification
-
return_type BELParser::Language::Version1_0::Functions::MicroRNAAbundance
-
return_type BELParser::Language::Version1_0::Functions::MolecularActivity
-
return_type BELParser::Language::Version1_0::Functions::CellSecretion
-
return_type BELParser::Language::Version2_0::Functions::ProteinAbundance
-
return_type BELParser::Language::Version1_0::Functions::TranscriptionalActivity
-
return_type BELParser::Language::Version1_0::Functions::GTPBoundActivity
-
#return_type BELParser::Language::Specification
-
return_type BELParser::Language::Version1_0::Functions::PhosphataseActivity
-
return_type BELParser::Language::Version2_0::Functions::CellSurfaceExpression
-
#return_type BELParser::Language::Function
-
return_type BELParser::Language::Version1_0::Functions::Translocation
-
return_type BELParser::Language::Version1_0::Functions::CompositeAbundance
-
return_type BELParser::Language::Version1_0::Functions::PeptidaseActivity
-
return_type BELParser::Language::Version2_0::Functions::Translocation
-
return_type BELParser::Language::Version2_0::Functions::MolecularActivity
-
#return_type BELParser::Parsers::AST::Function
-
return_type BELParser::Language::Version1_0::Functions::GeneAbundance
-
return_type BELParser::Language::Version2_0::Functions::Reaction
-
return_type BELParser::Language::Version2_0::Functions::Products
-
return_type BELParser::Language::Version1_0::Functions::BiologicalProcess
-
return_type BELParser::Language::Version2_0::Functions::Location
-
return_type BELParser::Language::Version1_0::Functions::CatalyticActivity
-
return_type BELParser::Language::Version2_0::Functions::Fragment
-
return_type BELParser::Language::Version2_0::Functions::Activity
-
return_type BELParser::Language::Version1_0::Functions::Reaction
-
return_type BELParser::Language::Version1_0::Functions::KinaseActivity
-
return_type BELParser::Language::Version1_0::Functions::Products
-
return_type BELParser::Language::Version2_0::Functions::Variant
-
return_type BELParser::Language::Version2_0::Functions::Fusion
-
return_type BELParser::Language::Version1_0::Functions::ProteinAbundance
-
return_type BELParser::Language::Version1_0::Functions::ChaperoneActivity
-
return_type BELParser::Language::Version2_0::Functions::FromLocation
-
return_type BELParser::Language::Version2_0::Functions::BiologicalProcess
-
return_type BELParser::Language::Version1_0::Functions::Fusion
-
return_type BELParser::Language::Version2_0::Functions::RNAAbundance
-
return_type BELParser::Language::Version2_0::Functions::List
-
return_type BELParser::Language::Version1_0::Functions::List
-
return_type BELParser::Language::Version2_0::Functions::ToLocation
-
return_type BELParser::Language::Version2_0::Functions::Degradation
-
return_type BELParser::Language::Version1_0::Functions::ComplexAbundance
-
return_type BELParser::Language::Version2_0::Functions::ComplexAbundance
-
return_type BELParser::Language::Version1_0::Functions::Degradation
-
return_type BELParser::Language::Version1_0::Functions::Truncation
-
return_type BELParser::Language::Version2_0::Functions::Reactants
-
return_type BELParser::Language::Version2_0::Functions::CompositeAbundance
-
return_type BELParser::Language::Version1_0::Functions::TransportActivity
-
return_type BELParser::Language::Version2_0::Functions::Pathology
-
return_type BELParser::Language::Version1_0::Functions::CellSurfaceExpression
-
return_type BELParser::Language::Version2_0::Functions::Abundance
-
return_type BELParser::Language::Version2_0::Functions::GeneAbundance
-
return_type BELParser::Language::Version1_0::Functions::Reactants
-
return_type BELParser::Language::Version1_0::Functions::Pathology
-
return_type BELParser::Language::Version1_0::Functions::Abundance
-
return_type BELParser::Language::Version1_0::Functions::ProteinModification
-
return_type BELParser::Language::Version1_0::Functions::Substitution
-
return_type BELParser::Language::Version1_0::Functions::RibosylationActivity
-
return_type BELParser::Language::Version2_0::Functions::CellSecretion
-
return_type BELParser::Language::Version1_0::Functions::RNAAbundance
-
#return_type_of BELParser::Language::Semantics::Builder
-
#return_types BELParser::Language::Specification
-
#return_types BELParser::Language::Semantics::SemanticReturnTypeOf
-
#s AST::Sexp
-
#second_child BELParser::Parsers::AST::Node
-
#self? BELParser::Language::Relationship
-
self? BELParser::Language::Version2_0::Relationships::HasProduct
-
self? BELParser::Language::Version1_0::Relationships::ReactantIn
-
self? BELParser::Language::Version1_0::Relationships::HasProduct
-
self? BELParser::Language::Version2_0::Relationships::ReactantIn
-
self? BELParser::Language::Version1_0::Relationships::Translocates
-
self? BELParser::Language::Version1_0::Relationships::ActsIn
-
self? BELParser::Language::Version2_0::Relationships::Translocates
-
self? BELParser::Language::Version1_0::Relationships::Includes
-
self? BELParser::Language::Version2_0::Relationships::Includes
-
self? BELParser::Language::Version2_0::Relationships::ActsIn
-
#self_relationships BELParser::Language::Specification
-
semantic_ast BELParser::Language::Version2_0::Functions::Degradation::Signatures::DegradationSignature
-
semantic_ast BELParser::Language::Version1_0::Functions::CellSecretion::Signatures::CellSecretionSignature
-
semantic_ast BELParser::Language::Version1_0::Functions::Degradation::Signatures::DegradationSignature
-
semantic_ast BELParser::Language::Version1_0::Functions::Truncation::Signatures::TruncationWithPositionSignature
-
semantic_ast BELParser::Language::Version1_0::Functions::RNAAbundance::Signatures::RNAAbundanceWithFusionSignature
-
semantic_ast BELParser::Language::Version1_0::Functions::Translocation::Signatures::TranslocationSignature
-
semantic_ast BELParser::Language::Version1_0::Functions::GeneAbundance::Signatures::GeneAbundanceWithFusionSignature
-
semantic_ast BELParser::Language::Version2_0::Functions::ProteinAbundance::Signatures::ProteinAbundanceWithLocationSignature
-
semantic_ast BELParser::Language::Version2_0::Functions::Reactants::Signatures::ReactantsSignature
-
semantic_ast BELParser::Language::Version2_0::Functions::Pathology::Signatures::PathologySignature
-
semantic_ast BELParser::Language::Version2_0::Functions::Abundance::Signatures::AbundanceWithLocationSignature
-
semantic_ast BELParser::Language::Version2_0::Functions::Abundance::Signatures::AbundanceSignature
-
semantic_ast BELParser::Language::Version2_0::Functions::Abundance::Signatures::AbundanceWithMolecularActivitySignature
-
semantic_ast BELParser::Language::Version1_0::Functions::TranscriptionalActivity::Signatures::TranscriptionalActivityOfComplexAbundanceSignature
-
semantic_ast BELParser::Language::Version1_0::Functions::Reactants::Signatures::ReactantsSignature
-
semantic_ast BELParser::Language::Version1_0::Functions::Pathology::Signatures::PathologySignature
-
semantic_ast BELParser::Language::Version1_0::Functions::Abundance::Signatures::AbundanceSignature
-
semantic_ast BELParser::Language::Version2_0::Functions::ProteinAbundance::Signatures::ProteinAbundanceWithProteinModificationSignature
-
semantic_ast BELParser::Language::Version2_0::Functions::GeneAbundance::Signatures::GeneAbundanceWithLocationSignature
-
semantic_ast BELParser::Language::Version1_0::Functions::Substitution::Signatures::SubstitutionWithReferencePositionVariantSignature
-
semantic_ast BELParser::Language::Version2_0::Functions::ProteinAbundance::Signatures::ProteinAbundanceWithVariantSignature
-
semantic_ast BELParser::Language::Version1_0::Functions::RibosylationActivity::Signatures::RibosylationActivityWithProteinAbundanceSignature
-
semantic_ast BELParser::Language::Version1_0::Functions::RibosylationActivity::Signatures::RibosylationActivityWithComplexAbundanceSignature
-
semantic_ast BELParser::Language::Version1_0::Functions::ProteinModification::Signatures::ProteinModificationWithCovalentAminoSignature
-
semantic_ast BELParser::Language::Version2_0::Functions::CellSecretion::Signatures::CellSecretionSignature
-
semantic_ast BELParser::Language::Version2_0::Functions::ToLocation::Signatures::ToLocationAnySignature
-
semantic_ast BELParser::Language::Version2_0::Functions::ToLocation::Signatures::ToLocationSignature
-
semantic_ast BELParser::Language::Version1_0::Functions::ProteinModification::Signatures::ProteinModificationWithCovalentAminoPositionSignature
-
semantic_ast BELParser::Language::Version1_0::Functions::GeneAbundance::Signatures::GeneAbundanceSignature
-
semantic_ast BELParser::Language::Version1_0::Functions::ProteinAbundance::Signatures::ProteinAbundanceWithSubstitutionSignature
-
semantic_ast BELParser::Language::Version2_0::Functions::Reaction::Signatures::ReactionSignature
-
semantic_ast BELParser::Language::Version1_0::Functions::TransportActivity::Signatures::TransportActivityOfComplexAbundanceSignature
-
semantic_ast BELParser::Language::Version2_0::Functions::Products::Signatures::ProductsSignature
-
semantic_ast BELParser::Language::Version2_0::Functions::GeneAbundance::Signatures::GeneAbundanceWithFusionSignature
-
semantic_ast BELParser::Language::Version2_0::Functions::Location::Signatures::LocationAnySignature
-
semantic_ast BELParser::Language::Version2_0::Functions::Location::Signatures::LocationSignature
-
semantic_ast BELParser::Language::Version2_0::Functions::Fragment::Signatures::FragmentWithRangeDescriptorSignature
-
semantic_ast BELParser::Language::Version2_0::Functions::Fragment::Signatures::FragmentWithAnySignature
-
semantic_ast BELParser::Language::Version2_0::Functions::Fragment::Signatures::FragmentWithAnyDescriptorSignature
-
semantic_ast BELParser::Language::Version2_0::Functions::Fragment::Signatures::FragmentWithRangeSignature
-
semantic_ast BELParser::Language::Version2_0::Functions::Activity::Signatures::ActivityWithSpecificActivityTypeSignature
-
semantic_ast BELParser::Language::Version1_0::Functions::ComplexAbundance::Signatures::NamedComplexAbundanceSignature
-
semantic_ast BELParser::Language::Version2_0::Functions::GeneAbundance::Signatures::GeneAbundanceWithVariantSignature
-
semantic_ast BELParser::Language::Version2_0::Functions::ProteinAbundance::Signatures::ProteinAbundanceWithFusionSignature
-
semantic_ast BELParser::Language::Version1_0::Functions::KinaseActivity::Signatures::KinaseActivityOfComplexAbundanceSignature
-
semantic_ast BELParser::Language::Version1_0::Functions::Reaction::Signatures::ReactionSignature
-
semantic_ast BELParser::Language::Version1_0::Functions::Products::Signatures::ProductsSignature
-
semantic_ast BELParser::Language::Version2_0::Functions::Activity::Signatures::ActivitySignature
-
semantic_ast BELParser::Language::Version1_0::Functions::CatalyticActivity::Signatures::CatalyticActivityOfProteinAbundanceSignature
-
semantic_ast BELParser::Language::Version1_0::Functions::ProteinAbundance::Signatures::ProteinAbundanceWithProteinModificationSignature
-
semantic_ast BELParser::Language::Version2_0::Functions::Variant::Signatures::VariantSignature
-
semantic_ast BELParser::Language::Version1_0::Functions::CatalyticActivity::Signatures::CatalyticActivityOfComplexAbundanceSignature
-
semantic_ast BELParser::Language::Version1_0::Functions::BiologicalProcess::Signatures::BiologicalProcessSignature
-
semantic_ast BELParser::Language::Version1_0::Functions::ComplexAbundance::Signatures::ComposedComplexAbundanceSignature
-
semantic_ast BELParser::Language::Version2_0::Functions::Fusion::Signatures::FusionWithRNAEncodingSignature
-
semantic_ast BELParser::Language::Version2_0::Functions::Fusion::Signatures::FusionWithGeneEncodingSignature
-
semantic_ast BELParser::Language::Version2_0::Functions::Fusion::Signatures::FusionWithProteinEncodingSignature
-
semantic_ast BELParser::Language::Version1_0::Functions::ProteinModification::Signatures::ProteinModificationWithCovalentSignature
-
semantic_ast BELParser::Language::Version1_0::Functions::Fusion::Signatures::FusionRNAAbundanceSignature
-
semantic_ast BELParser::Language::Version1_0::Functions::Fusion::Signatures::FusionRNAAbundanceWithBreakpointsSignature
-
semantic_ast BELParser::Language::Version1_0::Functions::Fusion::Signatures::FusionProteinAbundanceSignature
-
semantic_ast BELParser::Language::Version1_0::Functions::Fusion::Signatures::FusionGeneAbundanceSignature
-
semantic_ast BELParser::Language::Version1_0::Functions::Fusion::Signatures::FusionGeneAbundanceWithBreakpointsSignature
-
semantic_ast BELParser::Language::Version1_0::Functions::ChaperoneActivity::Signatures::ChaperoneActivityOfProteinAbundanceSignature
-
semantic_ast BELParser::Language::Version1_0::Functions::Fusion::Signatures::FusionProteinAbundanceWithBreakpointsSignature
-
semantic_ast BELParser::Language::Version1_0::Functions::PeptidaseActivity::Signatures::PeptidaseActivityOfProteinAbundanceSignature
-
semantic_ast BELParser::Language::Version1_0::Functions::ProteinAbundance::Signatures::ProteinAbundanceWithFusionSignature
-
semantic_ast BELParser::Language::Version2_0::Functions::List::Signatures::ListOfAbundanceSignature
-
semantic_ast BELParser::Language::Version2_0::Functions::List::Signatures::ListOfAbundanceEncodingSignature
-
semantic_ast BELParser::Language::Version2_0::Functions::BiologicalProcess::Signatures::BiologicalProcessSignature
-
semantic_ast BELParser::Language::Version1_0::Functions::List::Signatures::ListOfAbundanceEncodingSignature
-
semantic_ast BELParser::Language::Version1_0::Functions::List::Signatures::ListOfAbundanceSignature
-
semantic_ast BELParser::Language::Version1_0::Functions::ChaperoneActivity::Signatures::ChaperoneActivityOfComplexAbundanceSignature
-
semantic_ast BELParser::Language::Version1_0::Functions::KinaseActivity::Signatures::KinaseActivityOfProteinAbundanceSignature
-
semantic_ast BELParser::Language::Version2_0::Functions::GeneAbundance::Signatures::GeneAbundanceSignature
-
semantic_ast BELParser::Language::Version1_0::Functions::TransportActivity::Signatures::TransportActivityOfProteinAbundanceSignature
-
semantic_ast BELParser::Language::Version2_0::Functions::ComplexAbundance::Signatures::ComposedComplexAbundanceSignature
-
semantic_ast BELParser::Language::Version2_0::Functions::ProteinModification::Signatures::ProteinModificationWithTypeAminoPositionSignature
-
semantic_ast BELParser::Language::Version2_0::Functions::ProteinModification::Signatures::ProteinModificationWithTypeAminoSignature
-
semantic_ast BELParser::Language::Version2_0::Functions::ProteinModification::Signatures::ProteinModificationWithTypeSignature
-
semantic_ast BELParser::Language::Version1_0::Functions::MicroRNAAbundance::Signatures::MicroRNAAbundanceSignature
-
semantic_ast BELParser::Language::Version2_0::Functions::CompositeAbundance::Signatures::CompositeAbundanceSignature
-
semantic_ast BELParser::Language::Version1_0::Functions::CompositeAbundance::Signatures::CompositeAbundanceSignature
-
semantic_ast BELParser::Language::Version1_0::Functions::PhosphataseActivity::Signatures::PhosphataseActivityOfProteinAbundanceSignature
-
semantic_ast BELParser::Language::Version1_0::Functions::MolecularActivity::Signatures::MolecularActivityOfAbundanceSignature
-
semantic_ast BELParser::Language::Version1_0::Functions::RNAAbundance::Signatures::RNAAbundanceSignature
-
semantic_ast BELParser::Language::Version2_0::Functions::MicroRNAAbundance::Signatures::MicroRNAAbundanceWithLocationSignature
-
semantic_ast BELParser::Language::Version2_0::Functions::ProteinAbundance::Signatures::ProteinAbundanceWithFragmentSignature
-
#semantic_ast BELParser::Language::Signature
-
semantic_ast BELParser::Language::Version1_0::Functions::ProteinAbundance::Signatures::ProteinAbundanceSignature
-
semantic_ast BELParser::Language::Version1_0::Functions::ProteinAbundance::Signatures::ProteinAbundanceWithTruncationSignature
-
semantic_ast BELParser::Language::Version2_0::Functions::CellSurfaceExpression::Signatures::CellSurfaceExpressionSignature
-
semantic_ast BELParser::Language::Version1_0::Functions::TranscriptionalActivity::Signatures::TranscriptionalActivityOfProteinAbundanceSignature
-
semantic_ast BELParser::Language::Version2_0::Functions::MicroRNAAbundance::Signatures::MicroRNAAbundanceWithVariantSignature
-
semantic_ast BELParser::Language::Version2_0::Functions::ComplexAbundance::Signatures::NamedComplexAbundanceSignature
-
semantic_ast BELParser::Language::Version2_0::Functions::MolecularActivity::Signatures::MolecularActivitySignature
-
semantic_ast BELParser::Language::Version2_0::Functions::ComplexAbundance::Signatures::ComposedComplexAbundanceWithLocationSignature
-
semantic_ast BELParser::Language::Version1_0::Functions::PhosphataseActivity::Signatures::PhosphataseActivityOfComplexAbundanceSignature
-
semantic_ast BELParser::Language::Version1_0::Functions::GTPBoundActivity::Signatures::GTPBoundActivityOfProteinAbundanceSignature
-
semantic_ast BELParser::Language::Version2_0::Functions::MolecularActivity::Signatures::MolecularActivityAnySignature
-
semantic_ast BELParser::Language::Version1_0::Functions::PeptidaseActivity::Signatures::PeptidaseActivityOfComplexAbundanceSignature
-
semantic_ast BELParser::Language::Version2_0::Functions::MicroRNAAbundance::Signatures::MicroRNAAbundanceSignature
-
semantic_ast BELParser::Language::Version1_0::Functions::GTPBoundActivity::Signatures::GTPBoundActivityOfComplexAbundanceSignature
-
semantic_ast BELParser::Language::Version2_0::Functions::ProteinAbundance::Signatures::ProteinAbundanceSignature
-
semantic_ast BELParser::Language::Version1_0::Functions::CellSurfaceExpression::Signatures::CellSurfaceExpressionSignature
-
semantic_ast BELParser::Language::Version2_0::Functions::Translocation::Signatures::TranslocationSignature
-
semantic_ast BELParser::Language::Version2_0::Functions::ComplexAbundance::Signatures::NamedComplexAbundanceWithLocationSignature
-
semantic_ast BELParser::Language::Version2_0::Functions::RNAAbundance::Signatures::RNAAbundanceWithLocationSignature
-
semantic_ast BELParser::Language::Version2_0::Functions::RNAAbundance::Signatures::RNAAbundanceWithFusionSignature
-
semantic_ast BELParser::Language::Version2_0::Functions::RNAAbundance::Signatures::RNAAbundanceWithVariantSignature
-
semantic_ast BELParser::Language::Version2_0::Functions::FromLocation::Signatures::FromLocationAnySignature
-
semantic_ast BELParser::Language::Version2_0::Functions::FromLocation::Signatures::FromLocationSignature
-
semantic_ast BELParser::Language::Version2_0::Functions::RNAAbundance::Signatures::RNAAbundanceSignature
-
#semantic_node BELParser::Language::Semantics::SemanticMatch
-
semantics_functions BELParser::Language::Semantics
-
#semantics_results BELParser::Language::ExpressionValidator::NestedStatementResult
-
#semantics_results BELParser::Language::ExpressionValidator::ObservedTermResult
-
#semantics_results BELParser::Language::ExpressionValidator::TermResult
-
#semantics_results BELParser::Language::ExpressionValidator::ParameterResult
-
#semantics_results BELParser::Language::ExpressionValidator::SimpleStatementResult
-
#serialize BELParser::Parsers
-
#set BELParser::Parsers::AST::Sexp
-
short BELParser::Language::Version1_0::Functions::RNAAbundance
-
short BELParser::Language::Version1_0::Functions::RibosylationActivity
-
short BELParser::Language::Version2_0::Relationships::Includes
-
short BELParser::Language::Version1_0::Functions::Substitution
-
short BELParser::Language::Version2_0::Relationships::DirectlyDecreases
-
short BELParser::Language::Version1_0::Relationships::Includes
-
short BELParser::Language::Version2_0::Relationships::ActsIn
-
short BELParser::Language::Version2_0::Relationships::HasVariant
-
short BELParser::Language::Version2_0::Relationships::Translocates
-
short BELParser::Language::Version2_0::Functions::Degradation
-
short BELParser::Language::Version1_0::Relationships::ActsIn
-
short BELParser::Language::Version2_0::Functions::ToLocation
-
short BELParser::Language::Version1_0::Functions::Degradation
-
short BELParser::Language::Version2_0::Relationships::HasModification
-
short BELParser::Language::Version1_0::Functions::ProteinModification
-
short BELParser::Language::Version2_0::Relationships::HasComponent
-
short BELParser::Language::Version2_0::Functions::Pathology
-
short BELParser::Language::Version2_0::Functions::Reactants
-
short BELParser::Language::Version2_0::Functions::Abundance
-
short BELParser::Language::Version1_0::Functions::CompositeAbundance
-
short BELParser::Language::Version1_0::Functions::Reactants
-
short BELParser::Language::Version1_0::Functions::Pathology
-
short BELParser::Language::Version1_0::Functions::Truncation
-
short BELParser::Language::Version1_0::Functions::Abundance
-
short BELParser::Language::Version2_0::Relationships::TranscribedTo
-
short BELParser::Language::Version2_0::Relationships::IsA
-
short BELParser::Language::Version2_0::Functions::Reaction
-
short BELParser::Language::Version2_0::Relationships::BiomarkerFor
-
short BELParser::Language::Version2_0::Functions::Location
-
short BELParser::Language::Version1_0::Functions::BiologicalProcess
-
short BELParser::Language::Version2_0::Functions::Fragment
-
short BELParser::Language::Version2_0::Functions::Products
-
short BELParser::Language::Version1_0::Relationships::IsA
-
short BELParser::Language::Version2_0::Functions::Activity
-
short BELParser::Language::Version1_0::Functions::ProteinAbundance
-
short BELParser::Language::Version1_0::Functions::Products
-
short BELParser::Language::Version1_0::Functions::Reaction
-
short BELParser::Language::Version2_0::Functions::Variant
-
short BELParser::Language::Version2_0::Functions::Fusion
-
short BELParser::Language::Version2_0::Relationships::TranslatedTo
-
short BELParser::Language::Version1_0::Relationships::CausesNoChange
-
short BELParser::Language::Version1_0::Relationships::DirectlyDecreases
-
short BELParser::Language::Version1_0::Functions::Fusion
-
short BELParser::Language::Version1_0::Functions::ChaperoneActivity
-
short BELParser::Language::Version2_0::Functions::MolecularActivity
-
short BELParser::Language::Version1_0::Functions::GTPBoundActivity
-
short BELParser::Language::Version1_0::Functions::List
-
short BELParser::Language::Version1_0::Functions::CatalyticActivity
-
short BELParser::Language::Version1_0::Relationships::HasModification
-
short BELParser::Language::Version2_0::Functions::List
-
short BELParser::Language::Version2_0::Relationships::PrognosticBiomarkerFor
-
short BELParser::Language::Version2_0::Relationships::HasComponents
-
short BELParser::Language::Version1_0::Relationships::PrognosticBiomarkerFor
-
short BELParser::Language::Version1_0::Functions::PeptidaseActivity
-
short BELParser::Language::Version1_0::Functions::MicroRNAAbundance
-
short BELParser::Language::Version1_0::Functions::TranscriptionalActivity
-
short BELParser::Language::Version2_0::Relationships::CausesNoChange
-
short BELParser::Language::Version2_0::Functions::ProteinModification
-
short BELParser::Language::Version1_0::Relationships::TranscribedTo
-
short BELParser::Language::Version2_0::Relationships::NegativeCorrelation
-
short BELParser::Language::Version1_0::Relationships::RateLimitingStepOf
-
short BELParser::Language::Version2_0::Relationships::DirectlyIncreases
-
short BELParser::Language::Version2_0::Relationships::RateLimitingStepOf
-
short BELParser::Language::Version1_0::Relationships::DirectlyIncreases
-
short BELParser::Language::Version2_0::Relationships::PositiveCorrelation
-
short BELParser::Language::Version1_0::Functions::ComplexAbundance
-
short BELParser::Language::Version1_0::Functions::MolecularActivity
-
#short BELParser::Language::Relationship
-
short BELParser::Language::Version2_0::Relationships::HasProduct
-
#short BELParser::Language::Function
-
short BELParser::Language::Version2_0::Functions::MicroRNAAbundance
-
short BELParser::Language::Version1_0::Functions::PhosphataseActivity
-
short BELParser::Language::Version2_0::Functions::CompositeAbundance
-
short BELParser::Language::Version1_0::Relationships::HasComponent
-
short BELParser::Language::Version1_0::Relationships::TranslatedTo
-
short BELParser::Language::Version1_0::Functions::CellSurfaceExpression
-
short BELParser::Language::Version2_0::Relationships::SubProcessOf
-
short BELParser::Language::Version1_0::Relationships::NegativeCorrelation
-
short BELParser::Language::Version2_0::Functions::CellSurfaceExpression
-
short BELParser::Language::Version1_0::Relationships::PositiveCorrelation
-
short BELParser::Language::Version2_0::Functions::ProteinAbundance
-
short BELParser::Language::Version1_0::Functions::TransportActivity
-
short BELParser::Language::Version2_0::Functions::ComplexAbundance
-
short BELParser::Language::Version1_0::Relationships::BiomarkerFor
-
short BELParser::Language::Version2_0::Relationships::Association
-
short BELParser::Language::Version2_0::Relationships::HasMembers
-
short BELParser::Language::Version1_0::Relationships::ReactantIn
-
short BELParser::Language::Version1_0::Relationships::Orthologous
-
short BELParser::Language::Version1_0::Relationships::HasVariant
-
short BELParser::Language::Version1_0::Relationships::HasProduct
-
short BELParser::Language::Version1_0::Relationships::HasMembers
-
short BELParser::Language::Version1_0::Relationships::Association
-
short BELParser::Language::Version1_0::Functions::KinaseActivity
-
short BELParser::Language::Version2_0::Relationships::HasMember
-
short BELParser::Language::Version1_0::Relationships::SubProcessOf
-
short BELParser::Language::Version2_0::Functions::CellSecretion
-
short BELParser::Language::Version1_0::Relationships::HasMember
-
short BELParser::Language::Version1_0::Functions::GeneAbundance
-
short BELParser::Language::Version2_0::Functions::GeneAbundance
-
short BELParser::Language::Version1_0::Relationships::HasComponents
-
short BELParser::Language::Version1_0::Functions::CellSecretion
-
short BELParser::Language::Version2_0::Relationships::Regulates
-
short BELParser::Language::Version2_0::Relationships::Decreases
-
short BELParser::Language::Version2_0::Relationships::Analogous
-
short BELParser::Language::Version2_0::Functions::Translocation
-
short BELParser::Language::Version2_0::Relationships::Increases
-
short BELParser::Language::Version2_0::Functions::BiologicalProcess
-
short BELParser::Language::Version2_0::Functions::RNAAbundance
-
short BELParser::Language::Version2_0::Functions::FromLocation
-
short BELParser::Language::Version1_0::Relationships::Increases
-
short BELParser::Language::Version1_0::Relationships::Decreases
-
short BELParser::Language::Version1_0::Functions::Translocation
-
short BELParser::Language::Version1_0::Relationships::Analogous
-
short BELParser::Language::Version1_0::Relationships::Translocates
-
short BELParser::Language::Version2_0::Relationships::Orthologous
-
short BELParser::Language::Version2_0::Relationships::ReactantIn
-
#signature BELParser::Language::Semantics::SignatureMappingWarning
-
#signature BELParser::Language::Semantics::SignatureMappingSuccess
-
signatures BELParser::Language::Version1_0::Functions::Substitution
-
signatures BELParser::Language::Version1_0::Functions::RNAAbundance
-
signatures BELParser::Language::Version2_0::Functions::ToLocation
-
signatures BELParser::Language::Version1_0::Functions::ProteinModification
-
signatures BELParser::Language::Version2_0::Functions::Degradation
-
signatures BELParser::Language::Version1_0::Functions::RibosylationActivity
-
signatures BELParser::Language::Version1_0::Functions::Degradation
-
signatures BELParser::Language::Version1_0::Functions::Truncation
-
signatures BELParser::Language::Version2_0::Functions::Reactants
-
signatures BELParser::Language::Version2_0::Functions::Pathology
-
signatures BELParser::Language::Version2_0::Functions::Abundance
-
signatures BELParser::Language::Version1_0::Functions::Reactants
-
signatures BELParser::Language::Version1_0::Functions::Abundance
-
signatures BELParser::Language::Version1_0::Functions::Pathology
-
signatures BELParser::Language::Version2_0::Functions::Reaction
-
signatures BELParser::Language::Version2_0::Functions::Products
-
signatures BELParser::Language::Version2_0::Functions::Location
-
signatures BELParser::Language::Version2_0::Functions::Fragment
-
signatures BELParser::Language::Version2_0::Functions::Activity
-
signatures BELParser::Language::Version1_0::Functions::Reaction
-
signatures BELParser::Language::Version1_0::Functions::Products
-
signatures BELParser::Language::Version2_0::Functions::Variant
-
signatures BELParser::Language::Version2_0::Functions::Fusion
-
signatures BELParser::Language::Version1_0::Functions::Fusion
-
signatures BELParser::Language::Version2_0::Functions::List
-
signatures BELParser::Language::Version1_0::Functions::CatalyticActivity
-
signatures BELParser::Language::Version1_0::Functions::List
-
signatures BELParser::Language::Version1_0::Functions::CellSurfaceExpression
-
signatures BELParser::Language::Version2_0::Functions::MicroRNAAbundance
-
signatures BELParser::Language::Version1_0::Functions::CompositeAbundance
-
signatures BELParser::Language::Version1_0::Functions::MolecularActivity
-
signatures BELParser::Language::Version2_0::Functions::ProteinModification
-
signatures BELParser::Language::Version1_0::Functions::MicroRNAAbundance
-
signatures BELParser::Language::Version1_0::Functions::Translocation
-
#signatures BELParser::Language::Function
-
signatures BELParser::Language::Version1_0::Functions::BiologicalProcess
-
signatures BELParser::Language::Version1_0::Functions::TranscriptionalActivity
-
signatures BELParser::Language::Version1_0::Functions::PhosphataseActivity
-
signatures BELParser::Language::Version1_0::Functions::ComplexAbundance
-
signatures BELParser::Language::Version2_0::Functions::ComplexAbundance
-
signatures BELParser::Language::Version2_0::Functions::MolecularActivity
-
signatures BELParser::Language::Version1_0::Functions::ChaperoneActivity
-
signatures BELParser::Language::Version1_0::Functions::PeptidaseActivity
-
signatures BELParser::Language::Version2_0::Functions::ProteinAbundance
-
signatures BELParser::Language::Version1_0::Functions::GTPBoundActivity
-
signatures BELParser::Language::Version2_0::Functions::CellSurfaceExpression
-
signatures BELParser::Language::Version2_0::Functions::CompositeAbundance
-
signatures BELParser::Language::Version1_0::Functions::KinaseActivity
-
signatures BELParser::Language::Version2_0::Functions::GeneAbundance
-
signatures BELParser::Language::Version2_0::Functions::CellSecretion
-
signatures BELParser::Language::Version2_0::Functions::BiologicalProcess
-
signatures BELParser::Language::Version1_0::Functions::CellSecretion
-
signatures BELParser::Language::Version1_0::Functions::GeneAbundance
-
signatures BELParser::Language::Version2_0::Functions::Translocation
-
signatures BELParser::Language::Version2_0::Functions::RNAAbundance
-
signatures BELParser::Language::Version2_0::Functions::FromLocation
-
signatures BELParser::Language::Version1_0::Functions::TransportActivity
-
signatures BELParser::Language::Version1_0::Functions::ProteinAbundance
-
#simple? BELParser::Expression::Model::Statement
-
#simple_statement BELParser::Parsers::AST::Sexp
-
#size BELParser::Language::Signature
-
#space_adjusted_caret_position BELParser::Parsers::Expression::StatementAutocomplete::Parser
-
#specification BELParser::Language::Semantics::SemanticsResult
-
#specification BELParser::Language::Syntax::SyntaxResult
-
specification BELParser::Language
-
specifications BELParser::Language
-
state_constants BELParser::Script::StateAggregator
-
#statement BELParser::Parsers::AST::Sexp
-
#statement BELParser::Parsers::AST::ObservedTerm
-
#statement BELParser::Parsers::AST::NestedStatement
-
#statement BELParser::Parsers::AST::SimpleStatement
-
#statement? BELParser::Parsers::AST::Object
-
statement_filter BELParser::Expression
-
#string BELParser::Parsers::Serializer
-
#string BELParser::Parsers::AST::Sexp
-
#string BELParser::Parsers::AST::Pattern
-
#string BELParser::Parsers::AST::Uri
-
#string BELParser::Parsers::AST::Url
-
string_form BELParser::Language::Version1_0::Functions::Substitution::Signatures::SubstitutionWithReferencePositionVariantSignature
-
string_form BELParser::Language::Version2_0::Functions::ToLocation::Signatures::ToLocationAnySignature
-
string_form BELParser::Language::Version2_0::Functions::ToLocation::Signatures::ToLocationSignature
-
string_form BELParser::Language::Version2_0::Functions::Degradation::Signatures::DegradationSignature
-
string_form BELParser::Language::Version1_0::Functions::Truncation::Signatures::TruncationWithPositionSignature
-
string_form BELParser::Language::Version1_0::Functions::Degradation::Signatures::DegradationSignature
-
string_form BELParser::Language::Version1_0::Functions::RibosylationActivity::Signatures::RibosylationActivityWithComplexAbundanceSignature
-
string_form BELParser::Language::Version2_0::Functions::Pathology::Signatures::PathologySignature
-
string_form BELParser::Language::Version2_0::Functions::Abundance::Signatures::AbundanceWithMolecularActivitySignature
-
string_form BELParser::Language::Version2_0::Functions::Reactants::Signatures::ReactantsSignature
-
string_form BELParser::Language::Version2_0::Functions::Abundance::Signatures::AbundanceSignature
-
string_form BELParser::Language::Version2_0::Functions::Abundance::Signatures::AbundanceWithLocationSignature
-
string_form BELParser::Language::Version1_0::Functions::RibosylationActivity::Signatures::RibosylationActivityWithProteinAbundanceSignature
-
string_form BELParser::Language::Version1_0::Functions::Pathology::Signatures::PathologySignature
-
string_form BELParser::Language::Version1_0::Functions::Reactants::Signatures::ReactantsSignature
-
string_form BELParser::Language::Version1_0::Functions::Abundance::Signatures::AbundanceSignature
-
string_form BELParser::Language::Version1_0::Functions::PhosphataseActivity::Signatures::PhosphataseActivityOfProteinAbundanceSignature
-
string_form BELParser::Language::Version2_0::Functions::Reaction::Signatures::ReactionSignature
-
string_form BELParser::Language::Version2_0::Functions::Products::Signatures::ProductsSignature
-
string_form BELParser::Language::Version2_0::Functions::Location::Signatures::LocationSignature
-
string_form BELParser::Language::Version2_0::Functions::Location::Signatures::LocationAnySignature
-
string_form BELParser::Language::Version2_0::Functions::Fragment::Signatures::FragmentWithRangeDescriptorSignature
-
string_form BELParser::Language::Version2_0::Functions::Fragment::Signatures::FragmentWithAnySignature
-
string_form BELParser::Language::Version2_0::Functions::Activity::Signatures::ActivityWithSpecificActivityTypeSignature
-
string_form BELParser::Language::Version2_0::Functions::Fragment::Signatures::FragmentWithRangeSignature
-
string_form BELParser::Language::Version2_0::Functions::Fragment::Signatures::FragmentWithAnyDescriptorSignature
-
string_form BELParser::Language::Version1_0::Functions::Products::Signatures::ProductsSignature
-
string_form BELParser::Language::Version1_0::Functions::Reaction::Signatures::ReactionSignature
-
string_form BELParser::Language::Version2_0::Functions::Activity::Signatures::ActivitySignature
-
string_form BELParser::Language::Version2_0::Functions::Variant::Signatures::VariantSignature
-
string_form BELParser::Language::Version2_0::Functions::Fusion::Signatures::FusionWithProteinEncodingSignature
-
string_form BELParser::Language::Version2_0::Functions::Fusion::Signatures::FusionWithRNAEncodingSignature
-
string_form BELParser::Language::Version2_0::Functions::Fusion::Signatures::FusionWithGeneEncodingSignature
-
string_form BELParser::Language::Version1_0::Functions::Fusion::Signatures::FusionRNAAbundanceSignature
-
string_form BELParser::Language::Version1_0::Functions::Fusion::Signatures::FusionProteinAbundanceWithBreakpointsSignature
-
string_form BELParser::Language::Version1_0::Functions::Fusion::Signatures::FusionProteinAbundanceSignature
-
string_form BELParser::Language::Version1_0::Functions::Fusion::Signatures::FusionRNAAbundanceWithBreakpointsSignature
-
string_form BELParser::Language::Version1_0::Functions::Fusion::Signatures::FusionGeneAbundanceWithBreakpointsSignature
-
string_form BELParser::Language::Version1_0::Functions::Fusion::Signatures::FusionGeneAbundanceSignature
-
string_form BELParser::Language::Version2_0::Functions::List::Signatures::ListOfAbundanceEncodingSignature
-
string_form BELParser::Language::Version2_0::Functions::List::Signatures::ListOfAbundanceSignature
-
string_form BELParser::Language::Version2_0::Functions::MolecularActivity::Signatures::MolecularActivityAnySignature
-
string_form BELParser::Language::Version1_0::Functions::List::Signatures::ListOfAbundanceEncodingSignature
-
string_form BELParser::Language::Version1_0::Functions::List::Signatures::ListOfAbundanceSignature
-
string_form BELParser::Language::Version1_0::Functions::ProteinModification::Signatures::ProteinModificationWithCovalentSignature
-
string_form BELParser::Language::Version1_0::Functions::RNAAbundance::Signatures::RNAAbundanceWithFusionSignature
-
string_form BELParser::Language::Version1_0::Functions::CellSurfaceExpression::Signatures::CellSurfaceExpressionSignature
-
string_form BELParser::Language::Version1_0::Functions::ProteinModification::Signatures::ProteinModificationWithCovalentAminoSignature
-
string_form BELParser::Language::Version2_0::Functions::RNAAbundance::Signatures::RNAAbundanceSignature
-
string_form BELParser::Language::Version2_0::Functions::CellSurfaceExpression::Signatures::CellSurfaceExpressionSignature
-
string_form BELParser::Language::Version2_0::Functions::ProteinAbundance::Signatures::ProteinAbundanceWithProteinModificationSignature
-
string_form BELParser::Language::Version2_0::Functions::ProteinModification::Signatures::ProteinModificationWithTypeSignature
-
string_form BELParser::Language::Version2_0::Functions::ProteinAbundance::Signatures::ProteinAbundanceWithLocationSignature
-
string_form BELParser::Language::Version1_0::Functions::MicroRNAAbundance::Signatures::MicroRNAAbundanceSignature
-
string_form BELParser::Language::Version2_0::Functions::ProteinModification::Signatures::ProteinModificationWithTypeAminoSignature
-
string_form BELParser::Language::Version2_0::Functions::ProteinModification::Signatures::ProteinModificationWithTypeAminoPositionSignature
-
string_form BELParser::Language::Version2_0::Functions::CompositeAbundance::Signatures::CompositeAbundanceSignature
-
string_form BELParser::Language::Version1_0::Functions::ProteinModification::Signatures::ProteinModificationWithCovalentAminoPositionSignature
-
#string_form BELParser::Language::Signature
-
string_form BELParser::Language::Version2_0::Functions::MicroRNAAbundance::Signatures::MicroRNAAbundanceWithLocationSignature
-
string_form BELParser::Language::Version1_0::Functions::TranscriptionalActivity::Signatures::TranscriptionalActivityOfProteinAbundanceSignature
-
string_form BELParser::Language::Version2_0::Functions::MicroRNAAbundance::Signatures::MicroRNAAbundanceSignature
-
string_form BELParser::Language::Version2_0::Functions::MicroRNAAbundance::Signatures::MicroRNAAbundanceWithVariantSignature
-
string_form BELParser::Language::Version1_0::Functions::TranscriptionalActivity::Signatures::TranscriptionalActivityOfComplexAbundanceSignature
-
string_form BELParser::Language::Version2_0::Functions::MolecularActivity::Signatures::MolecularActivitySignature
-
string_form BELParser::Language::Version1_0::Functions::CompositeAbundance::Signatures::CompositeAbundanceSignature
-
string_form BELParser::Language::Version2_0::Functions::ComplexAbundance::Signatures::ComposedComplexAbundanceSignature
-
string_form BELParser::Language::Version2_0::Functions::ComplexAbundance::Signatures::ComposedComplexAbundanceWithLocationSignature
-
string_form BELParser::Language::Version2_0::Functions::ComplexAbundance::Signatures::NamedComplexAbundanceWithLocationSignature
-
string_form BELParser::Language::Version2_0::Functions::ComplexAbundance::Signatures::NamedComplexAbundanceSignature
-
string_form BELParser::Language::Version2_0::Functions::ProteinAbundance::Signatures::ProteinAbundanceSignature
-
string_form BELParser::Language::Version1_0::Functions::ProteinAbundance::Signatures::ProteinAbundanceSignature
-
string_form BELParser::Language::Version1_0::Functions::ProteinAbundance::Signatures::ProteinAbundanceWithTruncationSignature
-
string_form BELParser::Language::Version1_0::Functions::ProteinAbundance::Signatures::ProteinAbundanceWithFusionSignature
-
string_form BELParser::Language::Version1_0::Functions::ProteinAbundance::Signatures::ProteinAbundanceWithProteinModificationSignature
-
string_form BELParser::Language::Version1_0::Functions::ComplexAbundance::Signatures::NamedComplexAbundanceSignature
-
string_form BELParser::Language::Version1_0::Functions::ComplexAbundance::Signatures::ComposedComplexAbundanceSignature
-
string_form BELParser::Language::Version1_0::Functions::ProteinAbundance::Signatures::ProteinAbundanceWithSubstitutionSignature
-
string_form BELParser::Language::Version2_0::Functions::ProteinAbundance::Signatures::ProteinAbundanceWithFragmentSignature
-
string_form BELParser::Language::Version1_0::Functions::KinaseActivity::Signatures::KinaseActivityOfProteinAbundanceSignature
-
string_form BELParser::Language::Version1_0::Functions::KinaseActivity::Signatures::KinaseActivityOfComplexAbundanceSignature
-
string_form BELParser::Language::Version2_0::Functions::GeneAbundance::Signatures::GeneAbundanceWithVariantSignature
-
string_form BELParser::Language::Version2_0::Functions::GeneAbundance::Signatures::GeneAbundanceWithFusionSignature
-
string_form BELParser::Language::Version2_0::Functions::GeneAbundance::Signatures::GeneAbundanceSignature
-
string_form BELParser::Language::Version2_0::Functions::GeneAbundance::Signatures::GeneAbundanceWithLocationSignature
-
string_form BELParser::Language::Version1_0::Functions::GeneAbundance::Signatures::GeneAbundanceSignature
-
string_form BELParser::Language::Version1_0::Functions::GeneAbundance::Signatures::GeneAbundanceWithFusionSignature
-
string_form BELParser::Language::Version2_0::Functions::CellSecretion::Signatures::CellSecretionSignature
-
string_form BELParser::Language::Version1_0::Functions::CellSecretion::Signatures::CellSecretionSignature
-
string_form BELParser::Language::Version2_0::Functions::Translocation::Signatures::TranslocationSignature
-
string_form BELParser::Language::Version2_0::Functions::RNAAbundance::Signatures::RNAAbundanceWithVariantSignature
-
string_form BELParser::Language::Version2_0::Functions::RNAAbundance::Signatures::RNAAbundanceWithLocationSignature
-
string_form BELParser::Language::Version2_0::Functions::RNAAbundance::Signatures::RNAAbundanceWithFusionSignature
-
string_form BELParser::Language::Version2_0::Functions::FromLocation::Signatures::FromLocationSignature
-
string_form BELParser::Language::Version2_0::Functions::FromLocation::Signatures::FromLocationAnySignature
-
string_form BELParser::Language::Version1_0::Functions::Translocation::Signatures::TranslocationSignature
-
string_form BELParser::Language::Version1_0::Functions::RNAAbundance::Signatures::RNAAbundanceSignature
-
string_form BELParser::Language::Version1_0::Functions::GTPBoundActivity::Signatures::GTPBoundActivityOfProteinAbundanceSignature
-
string_form BELParser::Language::Version1_0::Functions::MolecularActivity::Signatures::MolecularActivityOfAbundanceSignature
-
string_form BELParser::Language::Version1_0::Functions::ChaperoneActivity::Signatures::ChaperoneActivityOfComplexAbundanceSignature
-
string_form BELParser::Language::Version1_0::Functions::ChaperoneActivity::Signatures::ChaperoneActivityOfProteinAbundanceSignature
-
string_form BELParser::Language::Version1_0::Functions::GTPBoundActivity::Signatures::GTPBoundActivityOfComplexAbundanceSignature
-
string_form BELParser::Language::Version1_0::Functions::TransportActivity::Signatures::TransportActivityOfProteinAbundanceSignature
-
string_form BELParser::Language::Version1_0::Functions::TransportActivity::Signatures::TransportActivityOfComplexAbundanceSignature
-
string_form BELParser::Language::Version1_0::Functions::PeptidaseActivity::Signatures::PeptidaseActivityOfProteinAbundanceSignature
-
string_form BELParser::Language::Version1_0::Functions::PeptidaseActivity::Signatures::PeptidaseActivityOfComplexAbundanceSignature
-
string_form BELParser::Language::Version2_0::Functions::BiologicalProcess::Signatures::BiologicalProcessSignature
-
string_form BELParser::Language::Version1_0::Functions::PhosphataseActivity::Signatures::PhosphataseActivityOfComplexAbundanceSignature
-
string_form BELParser::Language::Version1_0::Functions::CatalyticActivity::Signatures::CatalyticActivityOfComplexAbundanceSignature
-
string_form BELParser::Language::Version1_0::Functions::BiologicalProcess::Signatures::BiologicalProcessSignature
-
string_form BELParser::Language::Version1_0::Functions::CatalyticActivity::Signatures::CatalyticActivityOfProteinAbundanceSignature
-
string_form BELParser::Language::Version2_0::Functions::ProteinAbundance::Signatures::ProteinAbundanceWithVariantSignature
-
string_form BELParser::Language::Version2_0::Functions::ProteinAbundance::Signatures::ProteinAbundanceWithFusionSignature
-
#string_literal BELParser::Parsers::AST::String
-
#string_literal BELParser::Parsers::AST::Relationship
-
#string_literal BELParser::Parsers::AST::MultiIdentifier
-
#string_literal BELParser::Parsers::AST::Identifier
-
#string_value BELParser::Parsers::AST::String
-
#string_value? BELParser::Quoting
-
#subject BELParser::Expression::Model::Statement
-
#subject BELParser::Parsers::AST::Sexp
-
#subject BELParser::Parsers::AST::Statement
-
#subject_only? BELParser::Expression::Model::Statement
-
#subject_valid? BELParser::Language::ExpressionValidator::NestedStatementResult
-
#subject_valid? BELParser::Language::ExpressionValidator::SimpleStatementResult
-
#subject_valid? BELParser::Language::ExpressionValidator::ObservedTermResult
-
subtype_of? BELParser::Language::Version2_0::ValueEncodings::Any
-
subtype_of? BELParser::Language::Version1_0::ValueEncodings::Any
-
subtype_of? BELParser::Language::Version2_0::ReturnTypes::Any
-
subtype_of? BELParser::Language::Version1_0::ReturnTypes::Any
-
subtypes BELParser::Language::Version2_0::ValueEncodings::Any
-
subtypes BELParser::Language::Version1_0::ValueEncodings::Any
-
subtypes BELParser::Language::Version2_0::ReturnTypes::Any
-
subtypes BELParser::Language::Version1_0::ReturnTypes::Any
-
#success? BELParser::Language::Semantics::SemanticsWarning
-
#success? BELParser::Language::Semantics::SemanticsResult
-
#success? BELParser::Language::Semantics::SemanticMatch
-
#success? BELParser::Language::Syntax::SyntaxWarning
-
#success? BELParser::Language::Syntax::SyntaxResult
-
#success? BELParser::Language::Syntax::SyntaxError
-
#support BELParser::Script::NanopubMapper
-
#synonyms BELParser::Resource::JenaTDBReader::Concept
-
#synonyms BELParser::Resource::Concept
-
#synonyms BELParser::Resource::Value
-
syntax_constants BELParser::Script::Validator
-
#syntax_errors BELParser::Parsers::AST::Node
-
syntax_functions BELParser::Language::Syntax
-
#syntax_results BELParser::Language::ExpressionValidator::NestedStatementResult
-
#syntax_results BELParser::Language::ExpressionValidator::ObservedTermResult
-
#syntax_results BELParser::Language::ExpressionValidator::TermResult
-
#syntax_results BELParser::Language::ExpressionValidator::ParameterResult
-
#syntax_results BELParser::Language::ExpressionValidator::SimpleStatementResult
-
#term BELParser::Language::Semantics::Builder
-
#term BELParser::Parsers::AST::Sexp
-
#term BELParser::Parsers::AST::Subject
-
#term? BELParser::Parsers::AST::Object
-
#term? BELParser::Parsers::AST::Argument
-
term_filter BELParser::Expression
-
#terminal? BELParser::Language::Semantics::SemanticIsNil
-
#terminal? BELParser::Language::Semantics::SemanticValue
-
#terminal? BELParser::Language::Semantics::SemanticPrefix
-
#terminal? BELParser::Language::Semantics::SemanticIdentifier
-
#terminal? BELParser::Language::Semantics::SemanticASTNode
-
#third_child BELParser::Parsers::AST::Node
-
#title BELParser::Resource::JenaTDBReader::Concept
-
#title BELParser::Resource::Concept
-
#title BELParser::Resource::Value
-
#to_a BELParser::Resource::LRUCache
-
#to_a AST::Node
-
to_a BELParser::Version
-
#to_ast AST::Node
-
#to_bel AST::Node
-
#to_bel BEL::Translator::Plugins::BelScript::BelDiscreteSerialization
-
#to_bel BEL::Translator::Plugins::BelScript::BelCitationSerialization
-
#to_bel BEL::Translator::Plugins::BelScript::BelTopDownSerialization
-
#to_bel BEL::Translator::Plugins::BelScript::NanopubSerialization
-
#to_h BELParser::Language::Relationship
-
#to_h BELParser::Language::Function
-
#to_s BELParser::Language::Semantics::RelationshipDeprecationWarning
-
#to_s BELParser::Language::Semantics::MultipleSubjectObjectWarning
-
#to_s BELParser::Language::Semantics::DeeplyNestedStatementWarning
-
#to_s BELParser::Language::Semantics::ListFunctionSubjectWarning
-
#to_s BELParser::Language::Semantics::FunctionDeprecationWarning
-
#to_s BELParser::Language::Semantics::SignatureMappingWarning
-
#to_s BELParser::Language::Semantics::SignatureMappingSuccess
-
#to_s BELParser::Language::Semantics::NonObjectListWarning
-
#to_s BELParser::Language::Semantics::SemanticsInvalidAminoAcidWarning
-
#to_s BELParser::Language::Semantics::SemanticsInvalidAminoAcidRangeWarning
-
#to_s BELParser::Language::Semantics::SemanticsInvalidSequencePositionWarning
-
#to_s BELParser::Language::Semantics::SemanticsInvalidFunctionWarning
-
#to_s BELParser::Language::Semantics::SemanticsInvalidReturnTypeWarning
-
#to_s BELParser::Language::Semantics::SemanticsInvalidProteinModificationWarning
-
#to_s BELParser::Language::Semantics::SemanticsMissingEncodingWarning
-
#to_s BELParser::Language::Semantics::SemanticsInvalidEncodingWarning
-
#to_s BELParser::Language::Semantics::SemanticsInvalidNamespaceWarning
-
#to_s BELParser::Language::Semantics::SemanticsMissingNamespaceWarning
-
#to_s BELParser::Language::Semantics::SemanticsTypeWarning
-
#to_s BELParser::Language::Semantics::SemanticsNotNilNodeWarning
-
#to_s BELParser::Language::Semantics::SemanticsNilNodeWarning
-
#to_s BELParser::Language::ExpressionValidator::NestedStatementResult
-
#to_s BELParser::Language::Semantics::SemanticsArgumentLengthWarning
-
#to_s BELParser::Language::ExpressionValidator::Result
-
#to_s BELParser::Expression::Model::Annotation
-
#to_s BELParser::Language::Semantics::SemanticsWarning
-
#to_s BELParser::Expression::Model::Statement
-
#to_s BELParser::Expression::Model::Parameter
-
#to_s BELParser::Expression::Model::Namespace
-
#to_s BELParser::Language::Semantics::SemanticsResult
-
#to_s BELParser::Language::Semantics::SemanticMatch
-
#to_s BELParser::Language::Syntax::SyntaxWarning
-
#to_s BELParser::Language::Syntax::SyntaxResult
-
#to_s BELParser::Language::Syntax::SyntaxError
-
#to_s BELParser::Language::Relationship
-
#to_s BELParser::Expression::Model::Term
-
#to_s BELParser::Language::Signature
-
#to_s BELParser::Language::Function
-
#to_s AST::Node
-
#to_s BELParser::Resource::Value
-
to_s BELParser::Version
-
#to_s BELParser::Language::Semantics::NestedStatementWithoutObjectWarning
-
#to_s BELParser::Language::Semantics::NonCausalNestedStatementWarning
-
#to_s BELParser::Language::Semantics::RelationshipNotMultipleWarning
-
#to_sexp AST::Node
-
to_sym BELParser::Language::Version2_0::ReturnTypes::Reactants
-
to_sym BELParser::Language::Version2_0::ReturnTypes::Pathology
-
to_sym BELParser::Language::Version1_0::ReturnTypes::Pathology
-
to_sym BELParser::Language::Version1_0::ReturnTypes::Abundance
-
to_sym BELParser::Language::Version1_0::ReturnTypes::Reactants
-
to_sym BELParser::Language::Version2_0::ReturnTypes::Abundance
-
to_sym BELParser::Language::Version2_0::ReturnTypes::Location
-
to_sym BELParser::Language::Version2_0::ReturnTypes::Fragment
-
to_sym BELParser::Language::Version2_0::ReturnTypes::Products
-
to_sym BELParser::Language::Version2_0::ReturnTypes::Activity
-
to_sym BELParser::Language::Version1_0::ReturnTypes::Products
-
to_sym BELParser::Language::Version2_0::ReturnTypes::Variant
-
to_sym BELParser::Language::Version2_0::ValueEncodings::Any
-
to_sym BELParser::Language::Version2_0::ReturnTypes::Fusion
-
to_sym BELParser::Language::Version1_0::ValueEncodings::Any
-
to_sym BELParser::Language::Version1_0::ReturnTypes::Fusion
-
to_sym BELParser::Language::Version1_0::ValueEncodings::ComplexAbundance
-
to_sym BELParser::Language::Version1_0::ValueEncodings::ProteinAbundance
-
to_sym BELParser::Language::Version2_0::ReturnTypes::List
-
to_sym BELParser::Language::Version1_0::ReturnTypes::List
-
to_sym BELParser::Language::Version2_0::ReturnTypes::Any
-
to_sym BELParser::Language::Version1_0::ReturnTypes::ProteinModification
-
to_sym BELParser::Language::Version1_0::ReturnTypes::Any
-
to_sym BELParser::Language::Version2_0::ValueEncodings::ProteinModification
-
to_sym BELParser::Language::Version1_0::ReturnTypes::MolecularActivity
-
to_sym BELParser::Language::Version1_0::ReturnTypes::TranscriptionalActivity
-
to_sym BELParser::Language::Version1_0::ReturnTypes::RibosylationActivity
-
to_sym BELParser::Language::Version1_0::ValueEncodings::BiologicalProcess
-
to_sym BELParser::Language::Version2_0::ValueEncodings::MicroRNAAbundance
-
to_sym BELParser::Language::Version2_0::ValueEncodings::BiologicalProcess
-
to_sym BELParser::Language::Version2_0::ValueEncodings::ComplexAbundance
-
to_sym BELParser::Language::Version2_0::ReturnTypes::ProteinModification
-
to_sym BELParser::Language::Version1_0::ValueEncodings::MicroRNAAbundance
-
to_sym BELParser::Language::Version2_0::ValueEncodings::ProteinAbundance
-
#to_sym BELParser::Language::Relationship
-
to_sym BELParser::Language::Version1_0::ReturnTypes::PhosphataseActivity
-
#to_sym BELParser::Language::Function
-
to_sym BELParser::Language::Version2_0::ValueEncodings::RNAAbundance
-
to_sym BELParser::Language::Version1_0::ValueEncodings::RNAAbundance
-
to_sym BELParser::Language::Version1_0::ReturnTypes::KinaseActivity
-
to_sym BELParser::Language::Version2_0::ReturnTypes::GeneAbundance
-
to_sym BELParser::Language::Version1_0::ReturnTypes::GeneAbundance
-
to_sym BELParser::Language::Version2_0::ReturnTypes::RNAAbundance
-
to_sym BELParser::Language::Version2_0::ReturnTypes::FromLocation
-
to_sym BELParser::Language::Version1_0::ReturnTypes::RNAAbundance
-
to_sym BELParser::Language::Version2_0::ValueEncodings::Abundance
-
to_sym BELParser::Language::Version2_0::ValueEncodings::Pathology
-
to_sym BELParser::Language::Version1_0::ValueEncodings::Pathology
-
to_sym BELParser::Language::Version1_0::ReturnTypes::Substitution
-
to_sym BELParser::Language::Version1_0::ValueEncodings::Abundance
-
to_sym BELParser::Language::Version2_0::ValueEncodings::Activity
-
to_sym BELParser::Language::Version2_0::ReturnTypes::ToLocation
-
to_sym BELParser::Language::Version2_0::ValueEncodings::Location
-
to_sym BELParser::Language::Version1_0::ReturnTypes::Truncation
-
to_sym BELParser::Language::Version1_0::ReturnTypes::BiologicalProcess
-
to_sym BELParser::Language::Version1_0::ReturnTypes::CatalyticActivity
-
to_sym BELParser::Language::Version1_0::ReturnTypes::ChaperoneActivity
-
to_sym BELParser::Language::Version1_0::ReturnTypes::MicroRNAAbundance
-
to_sym BELParser::Language::Version2_0::ReturnTypes::MolecularActivity
-
to_sym BELParser::Language::Version1_0::ReturnTypes::TransportActivity
-
to_sym BELParser::Language::Version1_0::ReturnTypes::PeptidaseActivity
-
to_sym BELParser::Language::Version2_0::ReturnTypes::MicroRNAAbundance
-
to_sym BELParser::Language::Version2_0::ReturnTypes::BiologicalProcess
-
to_sym BELParser::Language::Version2_0::ReturnTypes::ProteinAbundance
-
to_sym BELParser::Language::Version2_0::ReturnTypes::ComplexAbundance
-
to_sym BELParser::Language::Version2_0::ValueEncodings::GeneAbundance
-
to_sym BELParser::Language::Version1_0::ReturnTypes::GTPBoundActivity
-
to_sym BELParser::Language::Version1_0::ValueEncodings::GeneAbundance
-
to_sym BELParser::Language::Version1_0::ReturnTypes::ComplexAbundance
-
to_sym BELParser::Language::Version1_0::ReturnTypes::ProteinAbundance
-
#trace BELParser::Parsers::Tracer
-
transitive_subtypes BELParser::Language::Version2_0::ValueEncodings::Any
-
transitive_subtypes BELParser::Language::Version1_0::ValueEncodings::Any
-
transitive_subtypes BELParser::Language::Version2_0::ReturnTypes::Any
-
transitive_subtypes BELParser::Language::Version1_0::ReturnTypes::Any
-
#traverse BELParser::Parsers::AST::Node
-
#type BELParser::Expression::Model::Annotation
-
#type BELParser::Expression::Model::Statement
-
#type BELParser::Expression::Model::Namespace
-
#type AST::Node
-
#types BELParser::Resource::JenaTDBReader::ConceptScheme
-
#types BELParser::Resource::ConceptScheme
-
#types BELParser::Resource::FileResource
-
#types BELParser::Resource::Dataset
-
#undefined_value BELParser::Language::Syntax::UndefinedNamespaceValueWarning
-
#unquote BELParser::Quoting
-
#unquoted? BELParser::Quoting
-
#unset BELParser::Parsers::AST::Sexp
-
#unsupported_version BELParser::Script::Syntax::UnsupportedBELVersionWarning
-
#update_pmod BELParser::Language::Version1_0::Upgrades::ProteinModificationTransformation
-
#updated BELParser::Parsers::AST::Node
-
#updated AST::Node
-
#upgrades BELParser::Language::Specification
-
#uri BELParser::Expression::Model::Namespace
-
#uri BELParser::Resource::JenaTDBReader::Concept
-
#uri BELParser::Language::Specification
-
#uri BELParser::Parsers::AST::Sexp
-
#uri BELParser::Resource::Concept
-
#uri BELParser::Parsers::AST::AnnotationDefinition
-
#uri BELParser::Parsers::AST::NamespaceDefinition
-
#uri? BELParser::Expression::Model::Annotation
-
#uri? BELParser::Expression::Model::Namespace
-
#uri? BELParser::Resource::ConceptScheme
-
#uri? BELParser::Resource::FileResource
-
#uri? BELParser::Resource::Dataset
-
#uri? BELParser::Parsers::AST::Domain
-
#uri_reader BELParser::Expression::Model::Annotation
-
#uri_reader BELParser::Expression::Model::Namespace
-
#url BELParser::Expression::Model::Namespace
-
#url BELParser::Parsers::AST::Sexp
-
#url? BELParser::Expression::Model::Annotation
-
#url? BELParser::Expression::Model::Namespace
-
#url? BELParser::Resource::FileResource
-
#url? BELParser::Resource::ConceptScheme
-
#url? BELParser::Resource::Dataset
-
#url? BELParser::Parsers::AST::Domain
-
#url_reader BELParser::Expression::Model::Annotation
-
#url_reader BELParser::Expression::Model::Namespace
-
#utf8_string BELParser::Parsers::Buffer
-
#valid? BELParser::Language::ExpressionValidator::NestedStatementResult
-
#valid? BELParser::Language::ExpressionValidator::SimpleStatementResult
-
#valid? BELParser::Language::ExpressionValidator::Result
-
#valid? BELParser::Expression::Model::Statement
-
#valid? BELParser::Expression::Model::Parameter
-
#valid? BELParser::Expression::Model::Term
-
#valid_object_signatures BELParser::Language::ExpressionValidator::NestedStatementResult
-
#valid_object_signatures BELParser::Language::ExpressionValidator::SimpleStatementResult
-
#valid_semantics? BELParser::Language::ExpressionValidator::NestedStatementResult
-
#valid_semantics? BELParser::Language::ExpressionValidator::SimpleStatementResult
-
#valid_semantics? BELParser::Language::ExpressionValidator::ObservedTermResult
-
#valid_semantics? BELParser::Language::ExpressionValidator::TermResult
-
#valid_semantics? BELParser::Language::ExpressionValidator::Result
-
#valid_signature_mappings BELParser::Language::ExpressionValidator::ParameterResult
-
#valid_signature_mappings BELParser::Language::ExpressionValidator::Result
-
#valid_subject_signatures BELParser::Language::ExpressionValidator::NestedStatementResult
-
#valid_subject_signatures BELParser::Language::ExpressionValidator::SimpleStatementResult
-
#valid_syntax? BELParser::Language::ExpressionValidator::SimpleStatementResult
-
#valid_syntax? BELParser::Language::ExpressionValidator::NestedStatementResult
-
#valid_syntax? BELParser::Language::ExpressionValidator::ObservedTermResult
-
#valid_syntax? BELParser::Language::ExpressionValidator::Result
-
#validate BELParser::Language::ExpressionValidator
-
#validation BELParser::Expression::Model::Statement
-
#validation BELParser::Expression::Model::Term
-
#value BELParser::Script::Syntax::UndefinedAnnotationValueWarning
-
#value BELParser::Expression::Model::Parameter
-
#value BELParser::Language::Semantics::Builder
-
#value BELParser::Parsers::AST::Sexp
-
#value BELParser::Parsers::AST::DocumentProperty
-
#value BELParser::Parsers::AST::Set
-
#value BELParser::Parsers::AST::Parameter
-
#value_encoding BELParser::Language::Specification
-
#value_patterns BELParser::Language::Semantics::SemanticIdentifier
-
#value_patterns BELParser::Language::Semantics::SemanticValue
-
values BELParser::Language::CovalentProteinModification
-
values BELParser::Language::AminoAcid
-
#variadic_arguments BELParser::Language::Semantics::Builder
-
#variadic_arguments? BELParser::Language::Semantics::SemanticTerm
-
#version BELParser::Language::Specification
-
versions BELParser::Language
-
#warnings BELParser::Script::NanopubMapper
-
#write BEL::Translator::Plugins::BelScript::BelScriptTranslator