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#all_xrefs Ensembl::Core::Gene
#assembled_seq_regions Ensembl::Core::SeqRegion
#assembly_links_as_assembly Ensembl::Core::SeqRegion
#assembly_links_as_component Ensembl::Core::SeqRegion
belongs_to_what ActiveRecord::Base
#canonical_transcript Ensembl::Core
#cdna2genomic Ensembl::Core::Transcript
#cds2genomic Ensembl::Core::Transcript
#cds_seq Ensembl::Core::Transcript
check Ensembl::Core::Collection
#coding_region_cdna_end Ensembl::Core::Transcript
#coding_region_cdna_start Ensembl::Core::Transcript
#coding_region_genomic_end Ensembl::Core::Transcript
#coding_region_genomic_start Ensembl::Core::Transcript
#collection_species Ensembl::Session
#component_seq_regions Ensembl::Core::SeqRegion
connect Ensembl::Variation::DBConnection
connect Ensembl::DummyDBConnection
connect Ensembl::Core::DBConnection
#consequence_type Ensembl::Variation::TranscriptVariation
#consequence_type Ensembl::Variation::VariationFeature
#consequence_types Ensembl::Variation::TranscriptVariation
#consequence_types Ensembl::Variation::VariationFeature
#coord_system Ensembl::Core::Gap
#coord_system_ids Ensembl::Session
#coord_systems Ensembl::Session
#display_label Ensembl::Core::Translation
#display_label Ensembl::Core::Transcript
#display_label Ensembl::Core::Gene
#display_name Ensembl::Core::Slice
#display_name Ensembl::Core::Gap
#dna_align_features Ensembl::Core::Slice
ensemblgenomes_connect Ensembl::Variation::DBConnection
ensemblgenomes_connect Ensembl::Core::DBConnection
#excise Ensembl::Core::Slice
#exon_for_cdna_position Ensembl::Core::Transcript
#exon_for_genomic_position Ensembl::Core::Transcript
fetch_all Ensembl::Core::Slice
fetch_all_by_source Ensembl::Variation::Variation
fetch_by_gene_stable_id Ensembl::Core::Slice
fetch_by_region Ensembl::Core::Slice
fetch_by_transcript_stable_id Ensembl::Core::Slice
#fetch_region Ensembl::Variation::VariationFeature
find_all_by_attrib_type_value Ensembl::Core::MiscFeature
find_all_by_display_label Ensembl::Core::ExternalDb
find_all_by_name Ensembl::Core::Gene
find_all_by_name Ensembl::Core::Marker
find_all_by_stable_id Ensembl::Core::Transcript
find_all_coord_by_table_name Ensembl::Core::Collection
find_by_attrib_type_value Ensembl::Core::MiscFeature
find_by_display_label Ensembl::Core::ExternalDb
find_by_name Ensembl::Core::Marker
find_by_name Ensembl::Core::Gene
find_by_stable_id Ensembl::Core::Translation
find_by_stable_id Ensembl::Core::Gene
find_by_stable_id Ensembl::Core::Transcript
find_by_stable_id Ensembl::Core::Exon
find_default_by_name Ensembl::Core::CoordSystem
#find_level Ensembl::Core::CoordSystem
#find_seqlevel Ensembl::Core::CoordSystem
#find_toplevel Ensembl::Core::CoordSystem
#five_prime_utr_seq Ensembl::Core::Transcript
#flanking_seq Ensembl::Variation::VariationFeature
generic_connect Ensembl::DBRegistry::Base
#genomic2cdna Ensembl::Core::Transcript
#genomic2cds Ensembl::Core::Transcript
#genomic2pep Ensembl::Core::Transcript
#get_consequence Top Level Namespace
#get_genotyped_variation_features Ensembl::Core::Slice
get_info Ensembl::DBRegistry::Base
get_name_from_db Ensembl::DBRegistry::Base
#get_objects Ensembl::Core::Slice
get_species_id Ensembl::Core::Collection
#get_structural_variations Ensembl::Core::Slice
#get_variation_features Ensembl::Core::Slice
#go_terms Ensembl::Core::Gene
has_what ActiveRecord::Base
#hgnc Ensembl::Core::Gene
inheritance_column Ensembl::Core::Marker
inheritance_column Ensembl::Core::ExternalDb
#initialize Ensembl::Core::Intron
#initialize Ensembl::Core::Gap
#initialize Ensembl::Core::Slice
#initialize Ensembl::Session
instance_method_already_implemented? Ensembl::Variation::StructuralVariation
#introns Ensembl::Core::Transcript
#length Ensembl::Core::Slice
#length Ensembl::Core::Sliceable
#method_missing Ensembl::Core::Slice
#misc_features Ensembl::Core::Slice
#name Ensembl::Core::Map
#name Ensembl::Core::Marker
#name_with_version Ensembl::Core::CoordSystem
#next_exon Ensembl::Core::Intron
#overlaps? Ensembl::Core::Slice
#pep2genomic Ensembl::Core::Transcript
#previous_exon Ensembl::Core::Intron
#project Ensembl::Core::Slice
#project Ensembl::Core::Sliceable
#protein_align_features Ensembl::Core::Slice
#protein_seq Ensembl::Core::Transcript
#release Ensembl::Session
#repeatmasked_seq Ensembl::Core::Slice
#reset Ensembl::Session
#run_calculations Top Level Namespace
#seq Ensembl::Core::Transcript
#seq Ensembl::Core::Exon
#seq Ensembl::Core::Sliceable
#seq Ensembl::Core::Slice
#seq_region Ensembl::Core::Intron
#seq_region Ensembl::Core::Slice
#seq_region_end Ensembl::Core::Intron
#seq_region_start Ensembl::Core::Intron
#seq_region_strand Ensembl::Core::Intron
#seq_regions Ensembl::Session
#seqlevel? Ensembl::Core::CoordSystem
#seqlevel_coord_system Ensembl::Session
#seqlevel_id Ensembl::Session
#sequence Ensembl::Core::SeqRegion
#show_help Top Level Namespace
#size Ensembl::Core::Gap
#slice Ensembl::Core::SeqRegion
#slice Ensembl::Core::Sliceable
#somatic_status Ensembl::Variation::Source
species Ensembl::Core::Collection
#split Ensembl::Core::Slice
#stable_id Ensembl::Core::Exon
#stable_id Ensembl::Core::Transcript
#stable_id Ensembl::Core::Gene
#stable_id Ensembl::Core::Translation
#start Ensembl::Core::Sliceable
#start Ensembl::Core::Slice
start_session IRB
#stop Ensembl::Core::Sliceable
#stop Ensembl::Core::Slice
#strand Ensembl::Core::Sliceable
#strand Ensembl::Core::Slice
#study_type Ensembl::Variation::Study
#sub_slice Ensembl::Core::Slice
#subsequence Ensembl::Core::SeqRegion
#sv_class Ensembl::Variation::StructuralVariation
#three_prime_utr_seq Ensembl::Core::Transcript
#to_s Ensembl::Core::MiscAttrib
#to_s Ensembl::Core::Xref
#toplevel? Ensembl::Core::CoordSystem
#toplevel_coord_system Ensembl::Session
#toplevel_id Ensembl::Session
#transcript Ensembl::Core::Intron
#transcript Ensembl::Variation::TranscriptVariation
#transcript_variations Ensembl::Variation::VariationFeature
#transform Ensembl::Core::Sliceable
#within? Ensembl::Core::Slice