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#[] Ms::Mascot::Mgf::Entry
#[]= Ms::Mascot::Mgf::Entry
#boundary Ms::Mascot::Dat::Archive
#charge Ms::Mascot::Mgf::Entry
content_type_class Ms::Mascot::Dat::Archive::Utils
#cterm Ms::Mascot::Dat::Summary::QueryHit
#cterm Ms::Mascot::Dat::Peptides::ProteinMap
#dat Ms::Mascot::Dat::Section
#data Ms::Mascot::Mgf::Entry
#data Ms::Mascot::Dat::Section
#delta_mass Ms::Mascot::Dat::Peptides::PeptideHit
#delta_mass Ms::Mascot::Dat::Summary::QueryHit
#description Ms::Mascot::Dat::Proteins::Protein
#doc Ms::Mascot::Formats::Xml
#dump Ms::Mascot::Mgf::Entry
#dump Ms::Mascot::Dump::Mgf
#each_peptide_hit Ms::Mascot::Dat::Archive
#each_query Ms::Mascot::Dat::Archive
foreach Ms::Mascot::Mgf
#format_parameters Ms::Mascot::Formats::Xml
from_hash Ms::Mascot::Dat::Summary::Id::Peptide
from_strs Ms::Mascot::Dat::Summary::Id::Peptide
#hashify Ms::Mascot::Formats::Xml::Utils
#header Ms::Mascot::Formats::Xml
#headers Ms::Mascot::Mgf::Entry
#headers Ms::Mascot::Fragment
#hit_num Ms::Mascot::Dat::Peptides::PeptideHit
#hits Ms::Mascot::Formats::Xml
#id Ms::Mascot::Dat::Peptides::ProteinMap
#id Ms::Mascot::Dat::Summary::ProteinHit
#index Ms::Mascot::Dat::Query
#initialize Ms::Mascot::Dat::Peptides
#initialize Ms::Mascot::Dat::Query
#initialize Ms::Mascot::Spectrum
#initialize Ms::Mascot::Dat::Summary
#initialize Ms::Mascot::Dat::Section
#initialize Ms::Mascot::Formats::Xml
#initialize Ms::Mascot::Mgf::Entry
#initialize Ms::Mascot::Dat::Archive
#ion_str Ms::Mascot::Dat::Query
#ions Ms::Mascot::Dat::Query
#load Ms::Mascot::Load::Mgf
#mass Ms::Mascot::Dat::Summary::ProteinHit
#mass Ms::Mascot::Dat::Proteins::Protein
#mass_map Ms::Mascot::Spectrum
#metadata Ms::Mascot::Dat::Archive
#modifications Ms::Mascot::Dat::Summary::QueryHit
#modifications Ms::Mascot::Formats::Xml
#modifications Ms::Mascot::Dat::Peptides::PeptideHit
#n_missed_cleavages Ms::Mascot::Dat::Summary::QueryHit
#n_missed_cleavages Ms::Mascot::Dat::Peptides::PeptideHit
#nqueries Ms::Mascot::Dat::Archive
#nterm Ms::Mascot::Dat::Peptides::ProteinMap
#nterm Ms::Mascot::Dat::Summary::QueryHit
#objectify Ms::Mascot::Formats::Xml::Utils
open Ms::Mascot::Mgf
open Ms::Mascot::Dat
#open_io Ms::Mascot::Load::Mgf
parse Ms::Mascot::Dat::Proteins
parse Ms::Mascot::Mgf::Entry
parse Ms::Mascot::Dat::Section
parse_content_type Ms::Mascot::Dat::Archive::Utils
parse_ions Ms::Mascot::Dat::Query::Utils
parse_metadata Ms::Mascot::Dat::Archive::Utils
parse_peptide_hit Ms::Mascot::Dat::Peptides::Utils
parse_protein_hit Ms::Mascot::Dat::Summary::Utils
parse_query_hit Ms::Mascot::Dat::Summary::Utils
#parse_response_body Ms::Mascot::Submit
#pepmass Ms::Mascot::Mgf::Entry
#peptide_end Ms::Mascot::Dat::Summary::QueryHit
#peptide_end Ms::Mascot::Dat::Peptides::ProteinMap
#peptide_hit Ms::Mascot::Dat::Peptides
#peptide_hits Ms::Mascot::Dat::Peptides
#peptide_mass Ms::Mascot::Dat::Summary::QueryHit
#peptide_mass Ms::Mascot::Dat::Peptides::PeptideHit
#peptide_start Ms::Mascot::Dat::Peptides::ProteinMap
#peptide_start Ms::Mascot::Dat::Summary::QueryHit
#peptides Ms::Mascot::Formats::Xml
#process Ms::Mascot::Submit
#process Ms::Mascot::Export
#protein Ms::Mascot::Dat::Proteins
#protein_hit Ms::Mascot::Dat::Summary
#protein_hits Ms::Mascot::Dat::Summary
#protein_maps Ms::Mascot::Dat::Peptides::PeptideHit
#proteins Ms::Mascot::Formats::Xml
#queries Ms::Mascot::Dat::Peptides
#query Ms::Mascot::Dat::Archive
#query_hit Ms::Mascot::Dat::Summary
#query_hits Ms::Mascot::Dat::Summary::ProteinHit
#query_hits Ms::Mascot::Dat::Summary
#query_num Ms::Mascot::Dat::Peptides::PeptideHit
#reindex Ms::Mascot::Dat::Archive
#reindex Ms::Mascot::Mgf::Archive
scan_ions Ms::Mascot::Dat::Query::Utils
#score Ms::Mascot::Dat::Peptides::PeptideHit
#score Ms::Mascot::Dat::Summary::QueryHit
#search_parameters Ms::Mascot::Formats::Xml
#section Ms::Mascot::Dat::Archive
#section_index Ms::Mascot::Dat::Archive
#section_name Ms::Mascot::Dat::Section
section_name Ms::Mascot::Dat::Section
#section_name Ms::Mascot::Dat::Archive
#section_names Ms::Mascot::Dat::Archive
#sequence Ms::Mascot::Dat::Summary::QueryHit
#sequence Ms::Mascot::Dat::Peptides::PeptideHit
#spectrum Ms::Mascot::Fragment
#str_to_entry Ms::Mascot::Dat::Archive
#str_to_entry Ms::Mascot::Mgf::Archive
#text Ms::Mascot::Dat::Summary::ProteinHit
#title Ms::Mascot::Mgf::Entry
#title Ms::Mascot::Dat::Query
#title= Ms::Mascot::Mgf::Entry
#to_mgf Ms::Mascot::Dat::Query
#to_s Ms::Mascot::Dat::Section
#to_s Ms::Mascot::Mgf::Entry
#uknown1 Ms::Mascot::Dat::Peptides::ProteinMap
#unknown1 Ms::Mascot::Dat::Summary::ProteinHit
#unknown10 Ms::Mascot::Dat::Summary::QueryHit
#unknown10 Ms::Mascot::Dat::Peptides::PeptideHit
#unknown11 Ms::Mascot::Dat::Summary::QueryHit
#unknown12 Ms::Mascot::Dat::Summary::QueryHit
#unknown13 Ms::Mascot::Dat::Summary::QueryHit
#unknown14 Ms::Mascot::Dat::Summary::QueryHit
#unknown2 Ms::Mascot::Dat::Summary::ProteinHit
#unknown3 Ms::Mascot::Dat::Peptides::PeptideHit
#unknown4 Ms::Mascot::Dat::Peptides::ProteinMap
#unknown5 Ms::Mascot::Dat::Peptides::PeptideHit
#unknown5 Ms::Mascot::Dat::Summary::QueryHit
#unknown7 Ms::Mascot::Dat::Summary::QueryHit
#unknown8 Ms::Mascot::Dat::Peptides::PeptideHit
#unknown9 Ms::Mascot::Dat::Peptides::PeptideHit
write Ms::Mascot::Mgf::Archive
write Ms::Mascot::Mgf