Method List
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#<=> ORF
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#[] Bio::Big::FrameCodonHelpers::FrameCodonSequence
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#aa ORF
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#aa FastaPairedRecord
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#aa_6_frames Nucleotide::Translate
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#aa_forward_frames Nucleotide::Translate
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#biolib Bio::Big::Environment
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#close FastaPairedWriter
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#close FastaWriter
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#close FastaReader
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#codons Bio::Big::FrameCodonHelpers::FrameCodonSequence
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#codons Bio::Big::ShortFrameState
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create_left Bio::Big::FrameCodonHelpers::CreateShortFrame
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create_right Bio::Big::FrameCodonHelpers::CreateShortFrame
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#descr FastaRecord
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#descr ORF
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#digest_tag FastaReader
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#each BlastClust
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#each Bio::Big::FrameCodonHelpers::FrameCodonSequence
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#each FastaReader
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#emit_seq Bio::Big::FastaEmitter
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#emit_seq Bio::Big::OrfEmitter
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#first FastaReader
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#frame ORF
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#fullseq ORFnucleotides
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#get FastaPairedReader
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#get FastaReader
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#get_by_index FastaReader
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#get_codon_orfs1 Bio::Big::ShortFrameState
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#get_codon_orfs2 Bio::Big::ShortFrameState
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#get_rec FastaReader
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#get_startstop_orfs Bio::Big::ShortFrameState
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#get_stopstop_orfs Bio::Big::ShortFrameState
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#id ORF
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#id FastaPairedRecord
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#id FastaRecord
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#indexer_get Indexer
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#indexer_get_by_index Indexer
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#indexer_set Indexer
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#indexer_use Indexer
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#initialize FastaReader
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#initialize Bio::Big::OrfEmitter
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#initialize PredictORF
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#initialize Bio::Big::FastaEmitter
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#initialize ORF
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#initialize Bio::Big::FrameCodonHelpers::FrameCodonSequence
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#initialize ORFnucleotides
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#initialize FastaPairedWriter
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#initialize ORFsequence
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#initialize BlastClust
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#initialize Nucleotide::Translate
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#initialize Bio::Big::ShortReversedFrameState
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#initialize FastaPairedReader
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#initialize FastaPairedRecord
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#initialize FastaWriter
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#initialize FastaRecord
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#initialize Bio::Big::ShortFrameState
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#log Bio::Big::Environment
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#longest_startstop PredictORF
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#min_size_codons Bio::Big::ShortFrameState
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#nt FastaPairedRecord
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#nt ORF
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#ntseq_pos Bio::Big::ShortFrameState
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#parse_each FastaReader
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#pos Bio::Big::FrameCodonHelpers::FrameCodonSequence
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pre_translate Bio::Big::TranslationAdapter
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#reversed Bio::Big::ShortReversedFrameState
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#rpos Bio::Big::FrameCodonHelpers::FrameCodonSequence
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#seq FastaRecord
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#seq ORFnucleotides
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#seq Bio::Big::ShortFrameState
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#seq ORFsequence
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#shift Bio::Big::FrameCodonHelpers::FrameCodonSequence
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#size Bio::Big::FrameCodonHelpers::FrameCodonSequence
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#size FastaReader
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#split Bio::Big::ShortFrameState
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#start ORFnucleotides
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#startstop PredictORF
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#stop ORFnucleotides
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#stopstop PredictORF
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#tag_digest Bio::Big::FastaEmitter
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#to_fastarec ORF
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#to_s ORFnucleotides
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#to_seq Bio::Big::FrameCodonHelpers::FrameCodonSequence
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#track_ntseq_pos Bio::Big::FrameCodonHelpers::TrackSequenceTrait
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translate Bio::Big::TranslationAdapter
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translation_table Bio::Big::TranslationAdapter
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update_reversed_sequence_pos Bio::Big::FrameCodonHelpers::TrackSequenceTrait
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update_sequence_pos Bio::Big::FrameCodonHelpers::TrackSequenceTrait
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#write FastaWriter
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#write FastaPairedWriter