Documentation for germ (0.3.1)

Alphabetic Index

Namespace Listing A-Z

A

AminoAcid
Annotation (GO)
AnnotationLine (GO::Annotation)

C

Chrom (Fasta)
Codon
Collection (Mutation)

D

DataTypes

F

G

H

HashLine (HashTable)
HashTable
HashTableAux
Header (Sam)

I

K

KeyError (GermConfig)

L

Line (VCF)
Line (Indelocator)
Line (Maf)
Line (MuTect)

M

O

Oncotate (Mutation)
Oncotator
Ontology (GO)

P

Position (GenomicLocus)
Preamble (VCF)
Printer

R

Read (Fastq)
Read (Sam)
Record (Mutation)
Record (Sam::Header)
Region (GenomicLocus)
RsemExpression (TCGA)

S

SDRF
Sam
Sample (TCGA)
SegFile
Segment (SegFile)
Set (IntervalList)

T

TCGA
TagSet (GO)
Term (GO)
Transcript (Oncotator)
Transcript (GTF)
Tree (IntervalList)
TreeNode (IntervalList)
TriNuc

V

VCF