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#<=> Bio::GFFbrowser::Helpers::Section
#[] Bio::GFFbrowser::Digest::LruTracker
#[] Bio::GFFbrowser::Digest::LruCacheHelpers::SeekRecList
#[] LRUHash
#[] Bio::GFFbrowser::Digest::NoCacheHelpers::SeekRecList
#[] Bio::GFF::FastaReader
#[]= Bio::GFFbrowser::Digest::LruCacheHelpers::SeekRecList
#[]= Bio::GFFbrowser::Digest::NoCacheHelpers::SeekRecList
#[]= Bio::GFFbrowser::Digest::LruTracker
#add Bio::GFFbrowser::Helpers::Counter
#add Bio::GFFbrowser::Digest::NoCacheHelpers::SeekLinkedRecs
#add Bio::GFFbrowser::Helpers::LinkedRecs
#add Bio::GFFbrowser::Digest::LruCacheHelpers::SeekLinkedRecs
#assemble Bio::GFFbrowser::Helpers::Gff3Sequence
#assembleAA Bio::GFFbrowser::Helpers::Gff3Sequence
#assembler Bio::GFFbrowser::GFF3
#assoc LRUHash
#attributes Bio::GFFbrowser::FastLineRecord
#cache Bio::GFFbrowser::Digest::LruTracker
#calls Bio::GFFbrowser::Digest::LruTracker
#clear LRUHash
#comment Bio::GFFbrowser::FastLineRecord
#debug Bio::GFFbrowser::Helpers::Logger
#default LRUHash
#default_proc LRUHash
#delete LRUHash
#delete_if LRUHash
#description Bio::GFFbrowser::Helpers::Gff3Sequence
#display Bio::GFFbrowser::Digest::LruTracker
#each Bio::GFFbrowser::Digest::LruCacheHelpers::SeekRecList
#each Bio::GFF::FastaReader
#each Bio::GFFbrowser::Digest::NoCacheHelpers::SeekRecList
#each_CDS Bio::GFFbrowser::Digest::Parser
#each_CDS_seq Bio::GFFbrowser::Digest::Parser
#each_CDS_seq Bio::GFFbrowser::Block::GffBlockParser
#each_exon Bio::GFFbrowser::Digest::Parser
#each_exon_seq Bio::GFFbrowser::Digest::Parser
#each_exon_seq Bio::GFFbrowser::Block::GffBlockParser
#each_gene Bio::GFFbrowser::Digest::Parser
#each_gene_seq Bio::GFFbrowser::Block::GffBlockParser
#each_gene_seq Bio::GFFbrowser::Digest::Parser
#each_item Bio::GFFbrowser::Digest::InMemory
#each_item Bio::GFFbrowser::Digest::NoCache
#each_item Bio::GFFbrowser::Digest::LruCache
#each_key LRUHash
#each_mRNA Bio::GFFbrowser::Digest::Parser
#each_mRNA_seq Bio::GFFbrowser::Block::GffBlockParser
#each_mRNA_seq Bio::GFFbrowser::Digest::Parser
#each_pair LRUHash
#each_rec Bio::GFF::GFF3::FileIterator
#each_seq Bio::GFFbrowser::Block::GffBlockParser
#each_sequence Bio::GFF::GFF3::FileIterator
#each_value LRUHash
#empty? LRUHash
#end Bio::GFFbrowser::FastLineRecord
#entry_id Bio::GFFbrowser::FastaRecord
#error Bio::GFFbrowser::Helpers::Logger
#fasta_io_seek Bio::GFF::GFF3::FileIterator
#feature Bio::GFFbrowser::FastLineRecord
fetch Bio::GFFbrowser::Digest::LruCacheHelpers::SeekRec
#fetch LRUHash
fetch Bio::GFFbrowser::Digest::NoCacheHelpers::SeekRec
#fetch Bio::GFFbrowser::Digest::LruCacheHelpers::LruRec
#fh Bio::GFF::GFF3::FileIterator
#find_component Bio::GFFbrowser::Helpers::Gff3Component
formatID Bio::GFFbrowser::Helpers::Record
#get_attribute Bio::GFFbrowser::FastLineRecord
#has_key? LRUHash
#has_value? LRUHash
#hits Bio::GFFbrowser::Digest::LruTracker
#id Bio::GFFbrowser::FastLineRecord
#id Bio::GFFbrowser::FastaRecord
#info Bio::GFFbrowser::Helpers::Logger
#initialize Bio::GFFbrowser::Helpers::Section
#initialize Bio::GFFbrowser::Digest::LruCache
#initialize Bio::GFF::GFF3::FastParserFileRecord
#initialize Bio::GFFbrowser::FastLineRecord
#initialize Bio::GFFbrowser::FastaRecord
#initialize Bio::GFFbrowser::Digest::NoCacheHelpers::SeekRecList
#initialize Bio::GFFbrowser::Digest::LruTracker
#initialize Bio::GFFbrowser::Digest::InMemory
#initialize Bio::GFFbrowser::Digest::NoCache
#initialize LRUHash
#initialize Bio::GFFbrowser::GFF3
#initialize Bio::GFF::GFF3::FileIterator
#initialize Bio::GFFbrowser::Digest::LruCacheHelpers::SeekRecList
#initialize Bio::GFFbrowser::GFF3ParseFile
#initialize Bio::GFF::FastaReader
#initialize Bio::GFFbrowser::Block::GffBlockParser
#initialize Bio::GFF::GFF3::BioRubyFileRecord
#initialize Bio::GFFbrowser::FastaWriter
#insert_after LRUHash::Node
#intersection Bio::GFFbrowser::Helpers::Section
#io_seek Bio::GFF::GFF3::BioRubyFileRecord
#io_seek Bio::GFF::GFF3::FastParserFileRecord
#key LRUHash::Node
#key LRUHash
#keys LRUHash
#log_sys_info Bio::GFFbrowser::Helpers::Logger
#max_size LRUHash
#misses Bio::GFFbrowser::Digest::LruTracker
#parse Bio::GFFbrowser::Digest::LruCache
#parse Bio::GFFbrowser::Block::GffBlockParser
#parse Bio::GFFbrowser::Digest::InMemory
#parse Bio::GFF::FastaReader
#parse Bio::GFFbrowser::Digest::NoCache
#parse_attributes_fast Bio::GFFbrowser::FastLineParser
#parse_block Bio::GFFbrowser::Block::GffBlockParser
#parse_line_fast Bio::GFFbrowser::FastLineParser
#phase Bio::GFFbrowser::FastLineRecord
#pred LRUHash::Node
#put Bio::GFFbrowser::FastaWriter
#rassoc LRUHash
#read_fasta Bio::GFFbrowser::Digest::Parser
#rec Bio::GFFbrowser::Helpers::Section
#records Bio::GFFbrowser::GFF3ParseFile
#release_proc LRUHash
#score Bio::GFFbrowser::FastLineRecord
#seq Bio::GFFbrowser::FastaRecord
#seqid Bio::GFFbrowser::FastLineRecord
#sequencelist Bio::GFFbrowser::Digest::InMemory
#sequences Bio::GFFbrowser::GFF3ParseFile
#show_unrecognized_features Bio::GFFbrowser::Digest::Parser
#size LRUHash
sort Bio::GFFbrowser::Helpers::Sections
#source Bio::GFFbrowser::FastLineRecord
#start Bio::GFFbrowser::FastLineRecord
#store LRUHash
#store_record Bio::GFFbrowser::Digest::Parser
#strand Bio::GFFbrowser::FastLineRecord
#succ LRUHash::Node
#to_s Bio::GFFbrowser::FastaRecord
#to_s LRUHash
#unlink LRUHash::Node
#validate_cdss Bio::GFFbrowser::Helpers::Validate
#validate_mrnas Bio::GFFbrowser::Helpers::Validate
#validate_nonoverlapping Bio::GFFbrowser::Digest::NoCacheHelpers::SeekLinkedRecs
#validate_nonoverlapping Bio::GFFbrowser::Helpers::LinkedRecs
#validate_nonoverlapping Bio::GFFbrowser::Digest::LruCacheHelpers::SeekLinkedRecs
#validate_seqname Bio::GFFbrowser::Digest::NoCacheHelpers::SeekLinkedRecs
#validate_seqname Bio::GFFbrowser::Helpers::LinkedRecs
#validate_seqname Bio::GFFbrowser::Digest::LruCacheHelpers::SeekLinkedRecs
#validate_shared_parent Bio::GFFbrowser::Digest::NoCacheHelpers::SeekLinkedRecs
#validate_shared_parent Bio::GFFbrowser::Helpers::LinkedRecs
#validate_shared_parent Bio::GFFbrowser::Digest::LruCacheHelpers::SeekLinkedRecs
#value LRUHash::Node
#values LRUHash
#values_at LRUHash
#warn Bio::GFFbrowser::Helpers::Logger