Method List

Classes Methods Files

Search:

#add_cut_range Bio::RestrictionEnzyme::Range::SequenceRange
#add_cut_ranges Bio::RestrictionEnzyme::Range::SequenceRange
#add_cuts_from_cut_ranges Bio::RestrictionEnzyme::Range::SequenceRange::CalculatedCuts
#add_horizontal_cut_range Bio::RestrictionEnzyme::Range::SequenceRange
#add_spacing Bio::RestrictionEnzyme::StringFormatting
align Bio::RestrictionEnzyme::DoubleStranded::AlignedStrands
align_with_cuts Bio::RestrictionEnzyme::DoubleStranded::AlignedStrands
#aligned_strands Bio::RestrictionEnzyme::DoubleStranded
#aligned_strands_with_cuts Bio::RestrictionEnzyme::DoubleStranded
#blunt? Bio::RestrictionEnzyme::DoubleStranded
#c Bio::RestrictionEnzyme::Range::SequenceRange::Bin
#c_cut_left Bio::RestrictionEnzyme::Range::VerticalCutRange
#c_cut_left Bio::RestrictionEnzyme::Range::HorizontalCutRange
#c_cut_right Bio::RestrictionEnzyme::Range::VerticalCutRange
#c_cut_right Bio::RestrictionEnzyme::Range::HorizontalCutRange
#c_left Bio::RestrictionEnzyme::Range::SequenceRange::Fragment::DisplayFragment
#c_left Bio::RestrictionEnzyme::Fragment
#c_left Bio::RestrictionEnzyme::Range::SequenceRange
#c_right Bio::RestrictionEnzyme::Fragment
#c_right Bio::RestrictionEnzyme::Range::SequenceRange::Fragment::DisplayFragment
#c_right Bio::RestrictionEnzyme::Range::SequenceRange
#circular Bio::RestrictionEnzyme::Range::SequenceRange::CalculatedCuts
#complement Bio::RestrictionEnzyme::Range::SequenceRange::Fragments
#complement Bio::RestrictionEnzyme::DoubleStranded::AlignedStrands::Result
#complement Bio::RestrictionEnzyme::Range::SequenceRange::Fragments::DisplayFragment
#complement Bio::RestrictionEnzyme::DoubleStranded
#complement Bio::RestrictionEnzyme::Fragments
#complement Bio::RestrictionEnzyme::Fragment
#complement Bio::RestrictionEnzyme::DoubleStranded::CutLocations
#complement Bio::RestrictionEnzyme::DoubleStranded::CutLocationPair
#complement Bio::RestrictionEnzyme::Range::SequenceRange::Fragment::DisplayFragment
#complement_to_array_index Bio::RestrictionEnzyme::DoubleStranded::CutLocationsInEnzymeNotation
#create_action_at Bio::RestrictionEnzyme::DoubleStranded
cut Bio::RestrictionEnzyme::Analysis
#cut Bio::RestrictionEnzyme::Analysis
cut Bio::RestrictionEnzyme
#cut_locations Bio::RestrictionEnzyme::SingleStrand
#cut_locations Bio::RestrictionEnzyme::DoubleStranded
#cut_locations_in_enzyme_notation Bio::RestrictionEnzyme::SingleStrand
#cut_locations_in_enzyme_notation Bio::RestrictionEnzyme::DoubleStranded
#cut_ranges Bio::RestrictionEnzyme::Range::SequenceRange
cut_symbol Bio::RestrictionEnzyme::CutSymbol::CutSymbol__
#cut_symbol Bio::RestrictionEnzyme::CutSymbol
cut_symbol= Bio::RestrictionEnzyme::CutSymbol::CutSymbol__
cut_without_permutations Bio::RestrictionEnzyme::Analysis
#cut_without_permutations Bio::RestrictionEnzyme::Analysis
enzyme_name? Bio::RestrictionEnzyme
escaped_cut_symbol Bio::RestrictionEnzyme::CutSymbol::CutSymbol__
#escaped_cut_symbol Bio::RestrictionEnzyme::CutSymbol
#for_display Bio::RestrictionEnzyme::Range::SequenceRange::Fragment
#for_display Bio::RestrictionEnzyme::Range::SequenceRange::Fragments
#fragments Bio::RestrictionEnzyme::Range::SequenceRange
#hc_between_strands Bio::RestrictionEnzyme::Range::SequenceRange::CalculatedCuts
#hcuts Bio::RestrictionEnzyme::Range::HorizontalCutRange
#include? Bio::RestrictionEnzyme::Range::HorizontalCutRange
#include? Bio::RestrictionEnzyme::Range::VerticalCutRange
#include? Bio::RestrictionEnzyme::Range::CutRanges
#initialize Bio::RestrictionEnzyme::DoubleStranded
#initialize Bio::RestrictionEnzyme::DoubleStranded::AlignedStrands
#initialize Bio::RestrictionEnzyme::SingleStrand
#initialize Bio::RestrictionEnzyme::Range::SequenceRange::CalculatedCuts
#initialize Bio::RestrictionEnzyme::SingleStrand::CutLocationsInEnzymeNotation
#initialize Bio::RestrictionEnzyme::Range::HorizontalCutRange
#initialize Bio::RestrictionEnzyme::Range::SequenceRange
#initialize Bio::RestrictionEnzyme::DoubleStranded::CutLocations
#initialize Bio::RestrictionEnzyme::Range::VerticalCutRange
#initialize Bio::RestrictionEnzyme::DoubleStranded::CutLocationPair
#initialize Bio::RestrictionEnzyme::Range::SequenceRange::Fragments
#initialize Bio::RestrictionEnzyme::Range::SequenceRange::Fragment
#left Bio::RestrictionEnzyme::Range::SequenceRange
#left_padding Bio::RestrictionEnzyme::StringFormatting
#max Bio::RestrictionEnzyme::Range::CutRanges
#max Bio::RestrictionEnzyme::SingleStrand::CutLocationsInEnzymeNotation
#max Bio::RestrictionEnzyme::Range::HorizontalCutRange
#max Bio::RestrictionEnzyme::Range::VerticalCutRange
#max_vertical Bio::RestrictionEnzyme::Range::CutRanges
#min Bio::RestrictionEnzyme::Range::CutRanges
#min Bio::RestrictionEnzyme::Range::HorizontalCutRange
#min Bio::RestrictionEnzyme::SingleStrand::CutLocationsInEnzymeNotation
#min Bio::RestrictionEnzyme::Range::VerticalCutRange
#min_vertical Bio::RestrictionEnzyme::Range::CutRanges
new Bio::RestrictionEnzyme
#orientation Bio::RestrictionEnzyme::SingleStrand
#orientation Bio::RestrictionEnzyme::SingleStrandComplement
#p Bio::RestrictionEnzyme::Range::SequenceRange::Bin
#p_cut_left Bio::RestrictionEnzyme::Range::HorizontalCutRange
#p_cut_left Bio::RestrictionEnzyme::Range::VerticalCutRange
#p_cut_right Bio::RestrictionEnzyme::Range::VerticalCutRange
#p_cut_right Bio::RestrictionEnzyme::Range::HorizontalCutRange
#p_left Bio::RestrictionEnzyme::Range::SequenceRange
#p_left Bio::RestrictionEnzyme::Fragment
#p_left Bio::RestrictionEnzyme::Range::SequenceRange::Fragment::DisplayFragment
#p_right Bio::RestrictionEnzyme::Range::SequenceRange
#p_right Bio::RestrictionEnzyme::Range::SequenceRange::Fragment::DisplayFragment
#p_right Bio::RestrictionEnzyme::Fragment
#palindromic? Bio::RestrictionEnzyme::SingleStrand
#pattern Bio::RestrictionEnzyme::SingleStrand
#primary Bio::RestrictionEnzyme::DoubleStranded
#primary Bio::RestrictionEnzyme::Fragments
#primary Bio::RestrictionEnzyme::Fragment
#primary Bio::RestrictionEnzyme::DoubleStranded::CutLocationPair
#primary Bio::RestrictionEnzyme::DoubleStranded::CutLocations
#primary Bio::RestrictionEnzyme::DoubleStranded::AlignedStrands::Result
#primary Bio::RestrictionEnzyme::Range::SequenceRange::Fragments
#primary Bio::RestrictionEnzyme::Range::SequenceRange::Fragment::DisplayFragment
#primary Bio::RestrictionEnzyme::Range::SequenceRange::Fragments::DisplayFragment
#primary_to_array_index Bio::RestrictionEnzyme::DoubleStranded::CutLocationsInEnzymeNotation
#range Bio::RestrictionEnzyme::Range::VerticalCutRange
#re_cut_symbol Bio::RestrictionEnzyme::CutSymbol
#re_cut_symbol_adjacent Bio::RestrictionEnzyme::CutSymbol
rebase Bio::RestrictionEnzyme
#remove_incomplete_cuts Bio::RestrictionEnzyme::Range::SequenceRange::CalculatedCuts
#right Bio::RestrictionEnzyme::Range::SequenceRange
#right_padding Bio::RestrictionEnzyme::StringFormatting
#set_cut_symbol Bio::RestrictionEnzyme::CutSymbol
#size Bio::RestrictionEnzyme::Range::SequenceRange::Fragment
#size Bio::RestrictionEnzyme::Range::SequenceRange
#size Bio::RestrictionEnzyme::Range::SequenceRange::CalculatedCuts
#sticky? Bio::RestrictionEnzyme::DoubleStranded
#strands_for_display Bio::RestrictionEnzyme::Range::SequenceRange::CalculatedCuts
#strands_for_display_current Bio::RestrictionEnzyme::Range::SequenceRange::CalculatedCuts
#strip_cuts_and_padding Bio::RestrictionEnzyme::StringFormatting
#strip_padding Bio::RestrictionEnzyme::StringFormatting
#stripped Bio::RestrictionEnzyme::SingleStrand
#to_array_index Bio::RestrictionEnzyme::DoubleStranded::CutLocationsInEnzymeNotation
#to_array_index Bio::RestrictionEnzyme::SingleStrand::CutLocationsInEnzymeNotation
#vc_complement Bio::RestrictionEnzyme::Range::SequenceRange::CalculatedCuts
#vc_primary Bio::RestrictionEnzyme::Range::SequenceRange::CalculatedCuts
#with_cut_symbols Bio::RestrictionEnzyme::SingleStrand
#with_spaces Bio::RestrictionEnzyme::SingleStrand